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2024-05-17 10:41:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021078201            1904 bp    mRNA    linear   MAM 13-MAY-2017
DEFINITION  PREDICTED: Sus scrofa restin homolog (LOC100628139), mRNA.
ACCESSION   XM_021078201
VERSION     XM_021078201.1
DBLINK      BioProject: PRJNA28993
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_010459.5) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sus scrofa Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /isolate="TJ Tabasco"
                     /db_xref="taxon:9823"
                     /chromosome="17"
                     /sex="female"
                     /breed="Duroc"
     gene            1..1904
                     /gene="LOC100628139"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100628139"
     CDS             39..1904
                     /gene="LOC100628139"
                     /codon_start=1
                     /product="restin homolog"
                     /protein_id="XP_020933860.1"
                     /db_xref="GeneID:100628139"
                     /translation="
MEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKSSIKCKK"
     misc_feature    <57..779
                     /gene="LOC100628139"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
     misc_feature    <495..1604
                     /gene="LOC100628139"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
ORIGIN      
ttcctttattttagttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagagcagcatcaagtgcaaaaagtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]