2024-05-17 10:41:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021078201 1904 bp mRNA linear MAM 13-MAY-2017 DEFINITION PREDICTED: Sus scrofa restin homolog (LOC100628139), mRNA. ACCESSION XM_021078201 VERSION XM_021078201.1 DBLINK BioProject: PRJNA28993 KEYWORDS RefSeq; includes ab initio. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010459.5) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1904 /organism="Sus scrofa" /mol_type="mRNA" /isolate="TJ Tabasco" /db_xref="taxon:9823" /chromosome="17" /sex="female" /breed="Duroc" gene 1..1904 /gene="LOC100628139" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:100628139" CDS 39..1904 /gene="LOC100628139" /codon_start=1 /product="restin homolog" /protein_id="XP_020933860.1" /db_xref="GeneID:100628139" /translation="
MEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKMQHQVQKLEKENAELKDTNKMQAGTIEELQRNPPGPSSLQEAQDRYMEAAKCIEKSSIKCKK"
misc_feature <57..779 /gene="LOC100628139" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" misc_feature <495..1604 /gene="LOC100628139" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" ORIGIN
ttcctttattttagttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagatgcagcatcaagtgcaaaagcttgaaaaggaaaatgccgagttaaaagatacaaacaaaatgcaagcgggcacaattgaagagcttcagagaaacccgccgggtccaagttcgttgcaagaagcacaagatcgatatatggaggccgcgaaatgtattgagaagagcagcatcaagtgcaaaaagtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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