LOCUS       XM_020539217            2927 bp    mRNA    linear   PLN 20-FEB-2025
DEFINITION  PREDICTED: Zea mays HOX1B protein (LOC732843), transcript variant
            X1, mRNA.
ACCESSION   XM_020539217
VERSION     XM_020539217.3
DBLINK      BioProject: PRJNA655717
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_050101.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 31, 2020 this sequence version replaced XM_020539217.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_902167145.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/14/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2927
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /cultivar="B73"
                     /db_xref="taxon:4577"
                     /chromosome="6"
     gene            1..2927
                     /gene="LOC732843"
                     /gene_synonym="GRMZM2G094935; homeobox2; Hox1b"
                     /note="HOX1B protein; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 123 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 190
                     samples with support for all annotated introns"
                     /db_xref="GeneID:732843"
     CDS             290..2281
                     /gene="LOC732843"
                     /gene_synonym="GRMZM2G094935; homeobox2; Hox1b"
                     /codon_start=1
                     /product="HOX1B protein isoform X1"
                     /protein_id="XP_020394806.1"
                     /db_xref="GeneID:732843"
                     /translation="

MEKKTVHVPAEGNGEIENGTSSSQNPETLEHPVLLSASQTVPNNLGIRKNYKRAANRGSKTTSTEHVQPPGQPAAKRRKRSRASNKNSTDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKIRPEKELERAKSEILRCKLRIREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDISIEDPWEKVFPEAAAMANSSKQDEAFDLPSDDSDDNDFDPNMPEEHVASKEEGSSEEEEDDDGGSDSDDSDFLTCSDDLEPLIDKKNVDDLGLPSEDSEDDDYDPAGPDSDKDVEKKSNSDESDFMSDSDDFCKEIKKSGGHDEVSSPPLPDVKVGDMEKNTAQSNTTSSADDPMETEIDQSVVLPVSRRRQAERLDYKRLYDEAYGEASSDSSDEEEWSGKNTPIKSNEEGEVGSPAGKGSRVAHHNELTTQNTKESLHSLHGSVDEKHGDLTSNGSNIKDRKGHFGPVISQKLHEHFKTQPYPSRSLKESLAEELGLTFHQVNRWFENRRHFARLASSRKGISPDKHSPQNTNSPVTPSMQPKEPEGTVMEESNVCINRDATISKKAVSSKVGSRKNLSKSSPKSRVRS"

     misc_feature    833..991
                     /gene="LOC732843"
                     /gene_synonym="GRMZM2G094935; homeobox2; Hox1b"
                     /note="PHD finger found in Arabidopsis thaliana
                     pathogenesis-related homeodomain protein (PRHA) and
                     similar proteins; Region: PHD_PRHA_like; cd15504"
                     /db_xref="CDD:276979"
     misc_feature    order(833..835,875..889,902..904,974..976)
                     /gene="LOC732843"
                     /gene_synonym="GRMZM2G094935; homeobox2; Hox1b"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276979"
     misc_feature    1892..2041
                     /gene="LOC732843"
                     /gene_synonym="GRMZM2G094935; homeobox2; Hox1b"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(1892..1894,1901..1903,2021..2023,2030..2035)
                     /gene="LOC732843"
                     /gene_synonym="GRMZM2G094935; homeobox2; Hox1b"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

agttcctgagccgtgcatagaccatttttattctgcccgccgcttcgctcacgcggccacgcctcccgctcttcctccccgccacactcgccccacgcaggagaggaggagagccgccgggcctggaagcttctccgcggcgctgcgtcgccagctcgcagcgatttcaaggtgctggtgaatctggcttggccacatagatcttttttattgttgtcctcagaagacaggtttgctgagactgctttctgtctactgtaaattgatgaaattttggtgatcatatactatggaaaaaaagacagttcacgttccggctgagggtaatggtgagattgaaaatggtacgagctctagtcagaatcctgagacccttgagcatccagttttgctgtctgcatctcaaactgtgccaaataacttggggataaggaaaaactataaaagggcagcaaacagaggttcaaagacaacatctactgagcatgtgcagcctccaggacaaccagctgccaagagaagaaaaaggagcagagcctcaaacaaaaattcgacagatgagttctcacaaattcgtaaacgggttagatacattttgaaccgaatgaattatgagcaaagcctaattgaagcttatgctagtgaaggctggaaaaatcaaagtttggataagataagacctgagaaggagcttgaacgagccaaatcagaaatcttacgatgcaaattgagaatacgggaagtcttccaaaatattgattctcttctatccaaggggaaaattgacgaatctttatttgattctgaaggagaaatatcttgtgaagatatcttttgtgctacttgtggttcgaaaaatgctacattgggtaatgatatcattctctgtgatggagcttgtgacagagggttccaccagaactgtctaaatcctcctctgcgtactgaagatattcccatgggagatgaaggatggctctgcccagcatgtgattgcaagttagactgtatagatctaataaatgaactccagggcagtgacatctccattgaggacccttgggagaaagtttttccagaggcagctgctatggccaatagctctaagcaagatgaagcatttgatcttccatctgatgattcggatgacaatgattttgaccccaatatgcctgaagagcatgtggctagtaaggaagaaggatcttctgaagaggaagaggatgatgacggaggatcagactctgacgactctgacttcttaacctgttctgatgatttggaacctttgatagataaaaagaatgttgatgacctgggattaccttctgaagattcagaggatgatgactatgatccagcaggtcctgattcggataaagatgtcgaaaagaagtcaaattctgatgagtctgatttcatgtctgactcggatgatttttgtaaggagattaaaaaatctggtggacatgatgaagtttcatcgcctccattacccgatgtcaaggtgggtgatatggaaaagaacactgctcagtctaacacaacaagttctgctgacgaccctatggagactgaaatagaccagagtgtggttttaccagtatcaaggaggcgtcaagctgaacggttggactacaaaaggctgtatgatgaggcatatggtgaagcatcatctgattctagtgatgaagaagaatggtctgggaagaacacaccaataaaaagcaatgaagagggtgaagttggttctcctgcaggaaaaggctctagagttgcgcaccataatgaactgactacacaaaacactaaagaaagcttgcattctcttcatggttcagtagatgagaaacatggagatcttacttctaatggcagcaatatcaaagataggaaaggacattttggtccagtgattagtcagaagctacatgaacattttaagacacaaccataccctagtcgttctcttaaagaaagcttggcagaagaactagggctaacatttcatcaggtcaacagatggtttgaaaataggcgtcattttgcaaggttagcttcttccaggaaaggcatcagtccagataagcatagcccccaaaatactaatagcccagtgacacctagtatgcaacctaaagaaccagaggggactgtgatggaagaatctaatgtatgcataaacagggatgctaccatctctaaaaaagcggtttcttcaaaagtcggatcaagaaagaaccttagcaagagttcccctaaaagccgggtcagaagttgattctgccgcggatcagaatctgtggcctgaccttacagagaaggcagggcaggcaaaaagcaatacagcaggagttgaagaagaaaatgggacgatgaagtttgtagacaaagacatgagccagaatttggactgctcctgaaatttgcaggtctatgggccttgaaacttggcttgtatgactctacactggtagccaaaaaacatagatataccattgcaagtcagctagctctcattagatcatgccaatcaactaacaagcacgtcattcagtttttttcttctttttttttcctgtgggggctattgattcccgttctttgccaactgagggcttcctctgatttctgggtcgctctataggtattagctatcctacagatttgtttgcagcaattactgtcattgcaggaagagctcaattacaaaaccctaaggttcagtaacgacagcacgatgctgctatgacaggatgcagaagatgcattgttttcatcgatgttgattttcttgtaagatggaatgttgtaccaaacctgaacagatcactttgttgtgattcagtgtgcggctatggcctatggatttgtacttgttggactcacagagcatcgcgctttacatgcaaacggattttcggtaa

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