2024-03-30 00:39:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020425799 2182 bp mRNA linear INV 08-MAR-2017 DEFINITION PREDICTED: Pseudomyrmex gracilis bone morphogenetic protein receptor type-1B (LOC109853566), transcript variant X2, mRNA. ACCESSION XM_020425799 VERSION XM_020425799.1 DBLINK BioProject: PRJNA377720 KEYWORDS RefSeq. SOURCE Pseudomyrmex gracilis ORGANISM Pseudomyrmex gracilis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018020634.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pseudomyrmex gracilis Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2182 /organism="Pseudomyrmex gracilis" /mol_type="mRNA" /isolate="BER0280" /isolation_source="air" /db_xref="taxon:219809" /chromosome="Unknown" /country="USA: Florida Keys" /lat_lon="24.6978 N 81.3403 W" /collection_date="30-Aug-2011" gene 1..2182 /gene="LOC109853566" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:109853566" CDS 69..1619 /gene="LOC109853566" /codon_start=1 /product="bone morphogenetic protein receptor type-1B isoform X2" /protein_id="XP_020281388.1" /db_xref="GeneID:109853566" /translation="
MAALAATTDQRGCKYGLSLVGLGVFVARFIDVVGIVCYCDGHCPDGRQNGTCELRAGGQCFSAVEEVWDTDLGEFVPEYSYGCLPPDEGGFMQCKGNLVPHLQEKSITCCNSTALCNREQFPNITYKPRPTVSPNAIISASGAPLIILMVLFVVFMIILIMAGFMYVRYRRKERGQRLVPRQDTLKALMDQSSGSGSGLPLLVQQTIAKQLAMSQCVGKGRYGEVWLARWRGGEKVAVKVFFTLEEKSWFRETEIYQTVLMRHDNILGFIAADIKGTGSWTQMLLITDYHERGSLHDYLQTTMLDHQGLLVICLSIASGIAHLHTEIFGTQGKPAIAHRDIKSRNILVKRNGECAIADFGLAVRYFSDSGKIDIAQNPRVGTRRYMAPEVLDETLNTASFDAFRMADMYSVGLVFWEACRRCVTGGTSSMVEPYALPYHDVVPSDPDFEDMRLVVCVKRLRPVIPTRWDNDSILYALSKIMSECWHVNPLVRLTALRVKKTLSKLHVNNSIGVKIV"
misc_feature 177..428 /gene="LOC109853566" /note="Activin types I and II receptor domain; Region: Activin_recp; pfam01064" /db_xref="CDD:426025" misc_feature 618..695 /gene="LOC109853566" /note="Transforming growth factor beta type I GS-motif; Region: TGF_beta_GS; pfam08515" /db_xref="CDD:430045" misc_feature 711..1583 /gene="LOC109853566" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl21453" /db_xref="CDD:451246" misc_feature order(717..728,735..737,741..743,777..779,783..785, 867..869,927..938,1086..1088,1098..1103,1107..1109, 1137..1142) /gene="LOC109853566" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" ORIGIN
tgcggcgcgttgcggagagccctacgtcacagtgaagtatgtgctcccgagagtcccgagtgtagaaaatggctgcgctcgccgctacgacggatcagcgcggatgtaaatatggcctgtcgcttgtcggactgggagtgtttgtcgcgagatttatcgacgtggtcggtattgtttgctactgcgacggacactgtccggacggcaggcagaatggcacatgcgaactacgagccggaggtcagtgcttcagcgccgtggaagaggtgtgggacaccgatttgggagaatttgtccccgagtactcgtacggttgtttaccgcccgatgaaggaggtttcatgcagtgcaagggaaatctagttccccatctgcaagaaaagagcatcacatgttgcaattccacggcattgtgcaacagggaacaatttcccaatataacgtacaaaccccgacctaccgtgtcgcccaatgcgatcattagcgcgtcgggagcgccattaattattttaatggtcctgttcgtggttttcatgatcattctgataatggcgggtttcatgtacgtccgatatcgcaggaaggagcggggacagcgtttggtgccgcgccaggacactctcaaagcgttaatggatcaaagcagtggatcaggatccggactgccgctcctggtgcagcagactattgcgaaacaattggccatgtcgcagtgtgtaggaaaagggcgttacggcgaggtatggctcgcgcgatggcgaggcggagaaaaggtcgcggtgaaagtcttcttcacgttggaagagaaatcctggttccgtgaaacggaaatttatcagacggtgcttatgaggcatgacaatatcctgggcttcatcgccgctgatatcaaaggtaccggctcgtggacgcagatgttgctgatcacggattatcacgagagaggttcgttacacgattacttgcaaacaaccatgttggatcatcaaggtctgctggtgatttgcttgtccatcgcgtctggcatcgcacacttgcacacggaaatctttggtacgcagggaaaacctgcgatagctcacagagacatcaaaagcagaaatatcctagttaaaaggaacggagagtgtgccatagctgattttggcttggctgttcgctacttcagtgacagcggaaagatcgacattgctcagaatccccgagtgggcacacggcgttacatggcgccggaagtgttggacgagacactgaacacagcttccttcgacgcatttagaatggctgacatgtattctgtcggtcttgtgttctgggaagcatgcagaagatgcgtcacgggtggcacgagctcaatggtggagccttacgcgttgccttatcacgacgtcgtaccaagcgatccggatttcgaggacatgcgcctggtagtctgcgtgaaacgattgcgtccagttattccaacaagatgggataacgattcgattctgtacgcgttaagcaaaatcatgtcggaatgttggcacgtgaatccgctagttcgcttaactgctcttcgcgttaaaaagacactgtcaaaactgcatgtcaataacagcatcggcgtcaagatcgtgtagggtcgcttgatacaatgaaaaacagaacggactcttttaaaattatacaaataacttccttgtaaatacatcctcattgtacatagaactgttgacagactgcaacttgtgaagactgatgattaagattttgtagataaataagagcgaatgagaacgtacgaatgacgaggtatgcatcaaggcgtgaatgactaatcgtaagagatgcgaatctgttgtgtatatacatatttgaattgtgtacacagaaatatttttatatatatagcgtctcctcgattttgcgcattgtcttttcatgagaacgaaatgtcttcttatcgaagaattttttttccaagaaaggcgcaagcgtgagaaatttggaggttctatatatacaattttttatatttatataaaatgtgtcgcgcgcgcgttgaagccttaatttcgatacgttttgccatgttaatgttaattgaatattatcaacaaaagctactacttgtatatatatacatagatatatatatacttgtatatatacatacatacatatatatatatgtatatatatg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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