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2024-03-30 00:39:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_020425799            2182 bp    mRNA    linear   INV 08-MAR-2017
DEFINITION  PREDICTED: Pseudomyrmex gracilis bone morphogenetic protein
            receptor type-1B (LOC109853566), transcript variant X2, mRNA.
ACCESSION   XM_020425799
VERSION     XM_020425799.1
DBLINK      BioProject: PRJNA377720
KEYWORDS    RefSeq.
SOURCE      Pseudomyrmex gracilis
  ORGANISM  Pseudomyrmex gracilis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018020634.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Pseudomyrmex gracilis Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Pseudomyrmex gracilis"
                     /mol_type="mRNA"
                     /isolate="BER0280"
                     /isolation_source="air"
                     /db_xref="taxon:219809"
                     /chromosome="Unknown"
                     /country="USA: Florida Keys"
                     /lat_lon="24.6978 N 81.3403 W"
                     /collection_date="30-Aug-2011"
     gene            1..2182
                     /gene="LOC109853566"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:109853566"
     CDS             69..1619
                     /gene="LOC109853566"
                     /codon_start=1
                     /product="bone morphogenetic protein receptor type-1B
                     isoform X2"
                     /protein_id="XP_020281388.1"
                     /db_xref="GeneID:109853566"
                     /translation="
MAALAATTDQRGCKYGLSLVGLGVFVARFIDVVGIVCYCDGHCPDGRQNGTCELRAGGQCFSAVEEVWDTDLGEFVPEYSYGCLPPDEGGFMQCKGNLVPHLQEKSITCCNSTALCNREQFPNITYKPRPTVSPNAIISASGAPLIILMVLFVVFMIILIMAGFMYVRYRRKERGQRLVPRQDTLKALMDQSSGSGSGLPLLVQQTIAKQLAMSQCVGKGRYGEVWLARWRGGEKVAVKVFFTLEEKSWFRETEIYQTVLMRHDNILGFIAADIKGTGSWTQMLLITDYHERGSLHDYLQTTMLDHQGLLVICLSIASGIAHLHTEIFGTQGKPAIAHRDIKSRNILVKRNGECAIADFGLAVRYFSDSGKIDIAQNPRVGTRRYMAPEVLDETLNTASFDAFRMADMYSVGLVFWEACRRCVTGGTSSMVEPYALPYHDVVPSDPDFEDMRLVVCVKRLRPVIPTRWDNDSILYALSKIMSECWHVNPLVRLTALRVKKTLSKLHVNNSIGVKIV"
     misc_feature    177..428
                     /gene="LOC109853566"
                     /note="Activin types I and II receptor domain; Region:
                     Activin_recp; pfam01064"
                     /db_xref="CDD:426025"
     misc_feature    618..695
                     /gene="LOC109853566"
                     /note="Transforming growth factor beta type I GS-motif;
                     Region: TGF_beta_GS; pfam08515"
                     /db_xref="CDD:430045"
     misc_feature    711..1583
                     /gene="LOC109853566"
                     /note="Protein Kinases, catalytic domain; Region:
                     PKc_like; cl21453"
                     /db_xref="CDD:451246"
     misc_feature    order(717..728,735..737,741..743,777..779,783..785,
                     867..869,927..938,1086..1088,1098..1103,1107..1109,
                     1137..1142)
                     /gene="LOC109853566"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
ORIGIN      
tgcggcgcgttgcggagagccctacgtcacagtgaagtatgtgctcccgagagtcccgagtgtagaaaatggctgcgctcgccgctacgacggatcagcgcggatgtaaatatggcctgtcgcttgtcggactgggagtgtttgtcgcgagatttatcgacgtggtcggtattgtttgctactgcgacggacactgtccggacggcaggcagaatggcacatgcgaactacgagccggaggtcagtgcttcagcgccgtggaagaggtgtgggacaccgatttgggagaatttgtccccgagtactcgtacggttgtttaccgcccgatgaaggaggtttcatgcagtgcaagggaaatctagttccccatctgcaagaaaagagcatcacatgttgcaattccacggcattgtgcaacagggaacaatttcccaatataacgtacaaaccccgacctaccgtgtcgcccaatgcgatcattagcgcgtcgggagcgccattaattattttaatggtcctgttcgtggttttcatgatcattctgataatggcgggtttcatgtacgtccgatatcgcaggaaggagcggggacagcgtttggtgccgcgccaggacactctcaaagcgttaatggatcaaagcagtggatcaggatccggactgccgctcctggtgcagcagactattgcgaaacaattggccatgtcgcagtgtgtaggaaaagggcgttacggcgaggtatggctcgcgcgatggcgaggcggagaaaaggtcgcggtgaaagtcttcttcacgttggaagagaaatcctggttccgtgaaacggaaatttatcagacggtgcttatgaggcatgacaatatcctgggcttcatcgccgctgatatcaaaggtaccggctcgtggacgcagatgttgctgatcacggattatcacgagagaggttcgttacacgattacttgcaaacaaccatgttggatcatcaaggtctgctggtgatttgcttgtccatcgcgtctggcatcgcacacttgcacacggaaatctttggtacgcagggaaaacctgcgatagctcacagagacatcaaaagcagaaatatcctagttaaaaggaacggagagtgtgccatagctgattttggcttggctgttcgctacttcagtgacagcggaaagatcgacattgctcagaatccccgagtgggcacacggcgttacatggcgccggaagtgttggacgagacactgaacacagcttccttcgacgcatttagaatggctgacatgtattctgtcggtcttgtgttctgggaagcatgcagaagatgcgtcacgggtggcacgagctcaatggtggagccttacgcgttgccttatcacgacgtcgtaccaagcgatccggatttcgaggacatgcgcctggtagtctgcgtgaaacgattgcgtccagttattccaacaagatgggataacgattcgattctgtacgcgttaagcaaaatcatgtcggaatgttggcacgtgaatccgctagttcgcttaactgctcttcgcgttaaaaagacactgtcaaaactgcatgtcaataacagcatcggcgtcaagatcgtgtagggtcgcttgatacaatgaaaaacagaacggactcttttaaaattatacaaataacttccttgtaaatacatcctcattgtacatagaactgttgacagactgcaacttgtgaagactgatgattaagattttgtagataaataagagcgaatgagaacgtacgaatgacgaggtatgcatcaaggcgtgaatgactaatcgtaagagatgcgaatctgttgtgtatatacatatttgaattgtgtacacagaaatatttttatatatatagcgtctcctcgattttgcgcattgtcttttcatgagaacgaaatgtcttcttatcgaagaattttttttccaagaaaggcgcaagcgtgagaaatttggaggttctatatatacaattttttatatttatataaaatgtgtcgcgcgcgcgttgaagccttaatttcgatacgttttgccatgttaatgttaattgaatattatcaacaaaagctactacttgtatatatatacatagatatatatatacttgtatatatacatacatacatatatatatatgtatatatatg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]