2024-04-25 09:59:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020384627 811 bp mRNA linear PLN 23-MAY-2019 DEFINITION PREDICTED: Cajanus cajan protein argonaute 10-like (LOC109819045), partial mRNA. ACCESSION XM_020384627 VERSION XM_020384627.1 DBLINK BioProject: PRJNA376605 KEYWORDS RefSeq; includes ab initio. SOURCE Cajanus cajan (pigeon pea) ORGANISM Cajanus cajan Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017984420.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cajanus cajan Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 29% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..811 /organism="Cajanus cajan" /mol_type="mRNA" /bio_material="ICRISAT:ICPL 87119" /db_xref="taxon:3821" /chromosome="Unknown" gene <1..811 /gene="LOC109819045" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:109819045" CDS <1..811 /gene="LOC109819045" /codon_start=2 /product="protein argonaute 10-like" /protein_id="XP_020240216.1" /db_xref="GeneID:109819045" /translation="
AKLDNNEKLGDFTHKLEAACVACVETVESEKMTKDLAILFHGPNCTIFRREREYRVVIKFVARENLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASVAFIEPLPVVEYVGQLLGKDILARQLSDADRIKIKKALRGVKFEVTHRGSVRRKYRVSGLTSQPTRELMFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLRMEVGKIPAN"
misc_feature <1..139 /gene="LOC109819045" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:444908" misc_feature <146..277 /gene="LOC109819045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 305..457 /gene="LOC109819045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 458..799 /gene="LOC109819045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(605..607,650..652,683..685,695..697,749..751, 770..772,776..778) /gene="LOC109819045" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" ORIGIN
agccaagctggataataatgaaaaattaggggattttactcataagttggaagctgcatgtgttgcatgtgttgagacagtggagtcagaaaagatgactaaagatcttgcaattctatttcatggaccaaattgcaccattttcagaagggaaagagaatatagagtggtgatcaagtttgttgccagggaaaacttgcaccacttgggtcagtttttagctggtaaacgtgctgatgctccacaggaagcactccagattcttgacattgtattgagagagctatcatctaagaggttttgtccaatcgggagatccttcttttcacctgatattagaacacctcaacggcttggagagggtttggagtcatggtgtggattttaccaaagcataaggcctactcagatgggtctttccctcaatattgatatggcttctgttgcattcattgaacctcttccagttgtggaatatgttggccagctattaggaaaagatatcctggcgaggcaattgtctgatgctgatcgcattaaaattaagaaagccctcagaggagttaaatttgaagttacccacagagggagtgttagaagaaagtatcgtgtttctggtttgacttctcagccaaccagagaactcatgtttcctgttgatgagaactcaactatgaagtcagtagttgaatacttccaagagatgtatggtttcacaattaaatatactcaccttccttgccttcaagtaggaaaccaaaagaaagcaaattatttacgtatggaggtagggaaaattcctgcgaattga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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