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2024-04-25 09:59:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_020384627             811 bp    mRNA    linear   PLN 23-MAY-2019
DEFINITION  PREDICTED: Cajanus cajan protein argonaute 10-like (LOC109819045),
            partial mRNA.
ACCESSION   XM_020384627
VERSION     XM_020384627.1
DBLINK      BioProject: PRJNA376605
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cajanus cajan (pigeon pea)
  ORGANISM  Cajanus cajan
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
            Phaseoleae; Cajanus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017984420.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cajanus cajan Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 29% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Cajanus cajan"
                     /mol_type="mRNA"
                     /bio_material="ICRISAT:ICPL 87119"
                     /db_xref="taxon:3821"
                     /chromosome="Unknown"
     gene            <1..811
                     /gene="LOC109819045"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 70% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:109819045"
     CDS             <1..811
                     /gene="LOC109819045"
                     /codon_start=2
                     /product="protein argonaute 10-like"
                     /protein_id="XP_020240216.1"
                     /db_xref="GeneID:109819045"
                     /translation="
AKLDNNEKLGDFTHKLEAACVACVETVESEKMTKDLAILFHGPNCTIFRREREYRVVIKFVARENLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASVAFIEPLPVVEYVGQLLGKDILARQLSDADRIKIKKALRGVKFEVTHRGSVRRKYRVSGLTSQPTRELMFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLRMEVGKIPAN"
     misc_feature    <1..139
                     /gene="LOC109819045"
                     /note="Isocitrate/isopropylmalate dehydrogenase; Region:
                     Iso_dh; cl00445"
                     /db_xref="CDD:444908"
     misc_feature    <146..277
                     /gene="LOC109819045"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    305..457
                     /gene="LOC109819045"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    458..799
                     /gene="LOC109819045"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(605..607,650..652,683..685,695..697,749..751,
                     770..772,776..778)
                     /gene="LOC109819045"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
ORIGIN      
agccaagctggataataatgaaaaattaggggattttactcataagttggaagctgcatgtgttgcatgtgttgagacagtggagtcagaaaagatgactaaagatcttgcaattctatttcatggaccaaattgcaccattttcagaagggaaagagaatatagagtggtgatcaagtttgttgccagggaaaacttgcaccacttgggtcagtttttagctggtaaacgtgctgatgctccacaggaagcactccagattcttgacattgtattgagagagctatcatctaagaggttttgtccaatcgggagatccttcttttcacctgatattagaacacctcaacggcttggagagggtttggagtcatggtgtggattttaccaaagcataaggcctactcagatgggtctttccctcaatattgatatggcttctgttgcattcattgaacctcttccagttgtggaatatgttggccagctattaggaaaagatatcctggcgaggcaattgtctgatgctgatcgcattaaaattaagaaagccctcagaggagttaaatttgaagttacccacagagggagtgttagaagaaagtatcgtgtttctggtttgacttctcagccaaccagagaactcatgtttcctgttgatgagaactcaactatgaagtcagtagttgaatacttccaagagatgtatggtttcacaattaaatatactcaccttccttgccttcaagtaggaaaccaaaagaaagcaaattatttacgtatggaggtagggaaaattcctgcgaattga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]