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2024-05-05 23:35:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_020267904            1302 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Talaromyces atroroseus Metacaspase-1A (UA08_05615), partial mRNA.
ACCESSION   XM_020267904
VERSION     XM_020267904.1
DBLINK      BioProject: PRJNA374571
            BioSample: SAMN03339010
KEYWORDS    RefSeq.
SOURCE      Talaromyces atroroseus
  ORGANISM  Talaromyces atroroseus
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae;
            Talaromyces; Talaromyces sect. Trachyspermi.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T.,
            Mortensen,U.H. and Thrane,U.
  TITLE     Talaromyces atroroseus IBT 11181 draft genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1302)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1302)
  AUTHORS   Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T.,
            Mortensen,U.H. and Thrane,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2015) DTU Systems Biology, Technical University
            of Denmark, Soeltofts Plads 223, Kgs. Lyngby 2800, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_017971439).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Talaromyces atroroseus"
                     /mol_type="mRNA"
                     /strain="IBT 11181"
                     /isolation_source="plant fruit food product"
                     /host="Capsicum annuum"
                     /db_xref="taxon:1441469"
                     /chromosome="Unknown"
                     /country="Denmark"
                     /lat_lon="55.77198 N 12.50519 E"
                     /collection_date="17-Dec-1990"
     gene            <1..>1302
                     /locus_tag="UA08_05615"
                     /db_xref="GeneID:31005371"
     CDS             1..1302
                     /locus_tag="UA08_05615"
                     /note="GO_function: GO:0004197 - cysteine-type
                     endopeptidase activity; GO_process: GO:0006508 -
                     proteolysis; GO_process: GO:0006915 - apoptotic process"
                     /codon_start=1
                     /product="Metacaspase-1A"
                     /protein_id="XP_020118966.1"
                     /db_xref="GeneID:31005371"
                     /db_xref="InterPro:IPR011600"
                     /db_xref="InterPro:IPR029030"
                     /translation="
MSYYPPQYGGYPPPQYPPPNGYGPPPQAYPPPQNYAGYPGQGQQQPYQHHHHHTHHAHQGSYGYQQTPSPQSYNNGGYDRPPPQAPGYGPPPSSHSPIPPTHGAGYGRQGPAPPPNEAVAFGQGAPQGYNFRYSQCTGKRKALLIGINYFGQKGQLRGCINDVKNMSSYLNQAFGYAREDMVLLTDDQQNPMSQPTKANILRAMHWLVKDAQPNDSLFFHYSGHGGQTPDLDGDEDDGYDEVIYPVDFRAAGHIVDDEMHRIMVKPLQPGVRLTAIFDSCHSGSALDLPYIYSTQGVLKEPNLAKEAGAGLLSIVSSYARGDMGSMVSSAMGLIKKATKGDSAYEKTRQTKTSPADVIMWSGSKDEQTSQDATINGQATGAMSWAFINALKRNPHQSYVQLLNSIRDELAAKYTQKPQLSCSHPIDTNLLYVM"
     misc_feature    415..1278
                     /locus_tag="UA08_05615"
                     /note="Caspase domain; Region: Peptidase_C14; pfam00656"
                     /db_xref="CDD:425803"
ORIGIN      
atgtcctattatccgcctcagtatggcggctacccgccgccgcaataccctcctcccaatggttacggccctccgccacaggcctacccgccgccgcaaaactatgccggctatcctggtcaaggccagcagcagccttaccagcaccatcaccatcacacccaccacgctcatcagggcagctatggctatcagcaaacgccatcgcctcagtcttataacaatggtggatacgaccgacctcctcctcaggcacctggctatggccctccgccctcatcacattcccccattccgcccacccacggcgctggatacggcaggcaaggtcctgcacccccgcctaatgaagctgttgcgttcggtcaaggagccccgcaaggctacaactttcgatactcgcaatgtactggcaagagaaaggcgctgttgattggaatcaactactttggtcaaaagggtcagctgcgtggatgcatcaatgacgttaagaatatgtcttcatacctgaatcaggcctttggctatgcacgagaagatatggttcttcttacagacgaccagcaaaaccccatgagccagccgaccaaggcgaatatactgcgagcaatgcactggttggtcaaggacgctcagccgaacgattctttgtttttccactactcaggacatggtggccagactcctgatttggacggcgacgaagacgacggatacgacgaggtcatctacccggtggatttccgagctgctggacacattgtagacgacgaaatgcatcgcatcatggtcaagccgctgcagcccggcgtcagacttacagccatcttcgactcgtgccactctggatccgctctggatctaccatacatctactccacccaaggcgtgctcaaggagcccaacctggccaaggaagctggcgccggcttactcagcattgtttcgtcttatgcacgcggcgatatgggcagcatggtctcgtccgcaatgggcctgatcaaaaaggctaccaagggagactcggcatacgagaagacacgtcagacaaaaaccagtcctgcagatgtcatcatgtggtccggcagcaaggatgagcagacgagtcaagacgccacgatcaacggccaggctaccggcgccatgtcctgggcctttataaatgctctcaagaggaacccgcaccagagctacgttcagctactcaacagtatccgcgacgaacttgctgcaaaatatacccagaagcctcagttgagctgcagtcatccaattgataccaaccttctttacgtcatgtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]