2024-05-05 23:35:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020267904 1302 bp mRNA linear PLN 28-AUG-2017 DEFINITION Talaromyces atroroseus Metacaspase-1A (UA08_05615), partial mRNA. ACCESSION XM_020267904 VERSION XM_020267904.1 DBLINK BioProject: PRJNA374571 BioSample: SAMN03339010 KEYWORDS RefSeq. SOURCE Talaromyces atroroseus ORGANISM Talaromyces atroroseus Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Talaromyces; Talaromyces sect. Trachyspermi. REFERENCE 1 (bases 1 to 1302) AUTHORS Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T., Mortensen,U.H. and Thrane,U. TITLE Talaromyces atroroseus IBT 11181 draft genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1302) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1302) AUTHORS Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T., Mortensen,U.H. and Thrane,U. TITLE Direct Submission JOURNAL Submitted (24-JUN-2015) DTU Systems Biology, Technical University of Denmark, Soeltofts Plads 223, Kgs. Lyngby 2800, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_017971439). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1302 /organism="Talaromyces atroroseus" /mol_type="mRNA" /strain="IBT 11181" /isolation_source="plant fruit food product" /host="Capsicum annuum" /db_xref="taxon:1441469" /chromosome="Unknown" /country="Denmark" /lat_lon="55.77198 N 12.50519 E" /collection_date="17-Dec-1990" gene <1..>1302 /locus_tag="UA08_05615" /db_xref="GeneID:31005371" CDS 1..1302 /locus_tag="UA08_05615" /note="GO_function: GO:0004197 - cysteine-type endopeptidase activity; GO_process: GO:0006508 - proteolysis; GO_process: GO:0006915 - apoptotic process" /codon_start=1 /product="Metacaspase-1A" /protein_id="XP_020118966.1" /db_xref="GeneID:31005371" /db_xref="InterPro:IPR011600" /db_xref="InterPro:IPR029030" /translation="
MSYYPPQYGGYPPPQYPPPNGYGPPPQAYPPPQNYAGYPGQGQQQPYQHHHHHTHHAHQGSYGYQQTPSPQSYNNGGYDRPPPQAPGYGPPPSSHSPIPPTHGAGYGRQGPAPPPNEAVAFGQGAPQGYNFRYSQCTGKRKALLIGINYFGQKGQLRGCINDVKNMSSYLNQAFGYAREDMVLLTDDQQNPMSQPTKANILRAMHWLVKDAQPNDSLFFHYSGHGGQTPDLDGDEDDGYDEVIYPVDFRAAGHIVDDEMHRIMVKPLQPGVRLTAIFDSCHSGSALDLPYIYSTQGVLKEPNLAKEAGAGLLSIVSSYARGDMGSMVSSAMGLIKKATKGDSAYEKTRQTKTSPADVIMWSGSKDEQTSQDATINGQATGAMSWAFINALKRNPHQSYVQLLNSIRDELAAKYTQKPQLSCSHPIDTNLLYVM"
misc_feature 415..1278 /locus_tag="UA08_05615" /note="Caspase domain; Region: Peptidase_C14; pfam00656" /db_xref="CDD:425803" ORIGIN
atgtcctattatccgcctcagtatggcggctacccgccgccgcaataccctcctcccaatggttacggccctccgccacaggcctacccgccgccgcaaaactatgccggctatcctggtcaaggccagcagcagccttaccagcaccatcaccatcacacccaccacgctcatcagggcagctatggctatcagcaaacgccatcgcctcagtcttataacaatggtggatacgaccgacctcctcctcaggcacctggctatggccctccgccctcatcacattcccccattccgcccacccacggcgctggatacggcaggcaaggtcctgcacccccgcctaatgaagctgttgcgttcggtcaaggagccccgcaaggctacaactttcgatactcgcaatgtactggcaagagaaaggcgctgttgattggaatcaactactttggtcaaaagggtcagctgcgtggatgcatcaatgacgttaagaatatgtcttcatacctgaatcaggcctttggctatgcacgagaagatatggttcttcttacagacgaccagcaaaaccccatgagccagccgaccaaggcgaatatactgcgagcaatgcactggttggtcaaggacgctcagccgaacgattctttgtttttccactactcaggacatggtggccagactcctgatttggacggcgacgaagacgacggatacgacgaggtcatctacccggtggatttccgagctgctggacacattgtagacgacgaaatgcatcgcatcatggtcaagccgctgcagcccggcgtcagacttacagccatcttcgactcgtgccactctggatccgctctggatctaccatacatctactccacccaaggcgtgctcaaggagcccaacctggccaaggaagctggcgccggcttactcagcattgtttcgtcttatgcacgcggcgatatgggcagcatggtctcgtccgcaatgggcctgatcaaaaaggctaccaagggagactcggcatacgagaagacacgtcagacaaaaaccagtcctgcagatgtcatcatgtggtccggcagcaaggatgagcagacgagtcaagacgccacgatcaacggccaggctaccggcgccatgtcctgggcctttataaatgctctcaagaggaacccgcaccagagctacgttcagctactcaacagtatccgcgacgaacttgctgcaaaatatacccagaagcctcagttgagctgcagtcatccaattgataccaaccttctttacgtcatgtaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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