2024-05-06 00:18:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020265616 3075 bp mRNA linear PLN 28-AUG-2017 DEFINITION Talaromyces atroroseus Pro-apoptotic serine protease nma111 (UA08_03328), partial mRNA. ACCESSION XM_020265616 VERSION XM_020265616.1 DBLINK BioProject: PRJNA374571 BioSample: SAMN03339010 KEYWORDS RefSeq. SOURCE Talaromyces atroroseus ORGANISM Talaromyces atroroseus Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Talaromyces; Talaromyces sect. Trachyspermi. REFERENCE 1 (bases 1 to 3075) AUTHORS Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T., Mortensen,U.H. and Thrane,U. TITLE Talaromyces atroroseus IBT 11181 draft genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3075) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3075) AUTHORS Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T., Mortensen,U.H. and Thrane,U. TITLE Direct Submission JOURNAL Submitted (24-JUN-2015) DTU Systems Biology, Technical University of Denmark, Soeltofts Plads 223, Kgs. Lyngby 2800, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_017971435). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3075 /organism="Talaromyces atroroseus" /mol_type="mRNA" /strain="IBT 11181" /isolation_source="plant fruit food product" /host="Capsicum annuum" /db_xref="taxon:1441469" /chromosome="Unknown" /country="Denmark" /lat_lon="55.77198 N 12.50519 E" /collection_date="17-Dec-1990" gene <1..>3075 /locus_tag="UA08_03328" /db_xref="GeneID:31003083" CDS 1..3075 /locus_tag="UA08_03328" /note="GO_component: GO:0005634 - nucleus; GO_function: GO:0004252 - serine-type endopeptidase activity; GO_function: GO:0005515 - protein binding; GO_process: GO:0006508 - proteolysis; GO_process: GO:0006915 - apoptotic process" /codon_start=1 /product="Pro-apoptotic serine protease nma111" /protein_id="XP_020121228.1" /db_xref="GeneID:31003083" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR001940" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR025926" /translation="
MTGEARPKRKHSPVPASDRPAKHLKPESTVLTPGDETPANGTVYDVENDEDITPIVALGATQADSPEWQATIESVVKSVVSIHFCQTCSFDTDLSMCSQATGFVVDAKRGYILTNRHVVCAGPFWGYCIFDNHEECDVRPVYRDPVHDFGILKFDPKAIKYMDMTELKLNPEGAQVGVEIRVVGNDAGEKLSILSGVISRLDRNAPEYGEGYSDFNTNYIQAAAAASGGSSGSPVVNIAGHVVALQAGGRADGAATDYFLPLGRPLRALQCIQEEKPVTRGTIQTQWMIKPFDECRRLGLTPEWEASVRKTAPKETGMLVAEIVLPEGPADGKLQEGDVLLKVNGELLTQFVRLDDILDSNVGKSIHLLIQRGGEDLELECSVGDLHAITPDRFVSVAGGTFHDLSYQQARLYAIATRGVYVCEAAGSFKIENTLSGWIIDSVDKRPTRNLQEFIEVMKTIPDRSKIVISYRHIRDLHTRGTSIIYLDRHWHPKMSLAVRNDKTGLWDFSDIAEPLPAEPPVPRKADFIQLDGVSQTAAADIVRSFVRVSCTMPLKLDGFPQGKKTGYGLVIDAEKGLVVVSRAIVPYDLCDINITVADSIIVTGKVIFMHPLQNYTIVQYDPSLVQAPVKSARLSTENIKQGQDTIFVGFNQNLRIVVAKTTVTDITTVAIPANASAPRYRAINLDAITVDTGLSSQCTNGVLLRDDGVVQALWLNYLGERTPSSHKDVEYHLGLATPSLLPIISKIQGGEIPKLRILDMESYVIQMSQARIMGVSEKWIEQVAAANPSRHQLFMVRKLDSPPPSFTHHETDSLKEGDIILTLNGKLITRVSEFDVMYDNEVLDALIVRNGQEMHVKLRTVPTEDLETDRAVMFCGAVLQKPHHAVRQQISKLHSEIYISARSRGSPAYQYGLSPTNFITAVNGVQTRDLDSFVREVKKIPDNTYFRLRAVTFDNVPWVVTMKKNDHYFSMSEYVKDPSVPAGWKVVSYPKKDEASADTSNLTADAMDEGTEGGGSDAEPDQD"
misc_feature 154..1161 /locus_tag="UA08_03328" /note="Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265" /db_xref="CDD:223343" misc_feature 1162..1392 /locus_tag="UA08_03328" /note="PDZ-like domain; Region: PDZ_1; pfam12812" /db_xref="CDD:372324" misc_feature <2443..2577 /locus_tag="UA08_03328" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" misc_feature 2596..2832 /locus_tag="UA08_03328" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" ORIGIN
atgaccggcgaagctcgccccaagcgcaaacatagcccggtgcctgcgtccgacaggcctgcgaaacacctgaagcctgaatccactgttcttacgcccggggatgaaacacctgcgaatggcaccgtatatgacgtggagaatgatgaagacatcacaccgatcgttgcgttgggggcaactcaggcggactcgccggagtggcaagcgactattgagtcagtggtgaagagtgtcgtctcgatccatttctgtcagacatgctcattcgacaccgacctgtccatgtgtagccaggcaacagggttcgttgtggacgccaagagaggctacattctcacaaacagacatgttgtctgtgccggcccgttctggggttattgcattttcgacaatcatgaggagtgcgatgttcgtcccgtttatcgggatcctgtccacgactttggcattctgaaattcgaccccaaggcaatcaaatacatggatatgacagagctaaagttgaatccggagggggcacaagtgggggttgagatcagggtggtcggtaacgatgccggagagaagctaagtattctctctggtgtcatcagtcgccttgaccgtaacgctcctgagtacggcgaaggctacagcgacttcaacacaaattacatacaagcggctgctgccgccagcggcggaagctctggtagtcctgtcgtcaatatcgccgggcatgtcgtcgctctacaggccggtggtcgtgcggatggtgctgctacagattactttctcccactgggccgtccactacgcgcactccagtgcatacaggaagagaaacctgtcacgcgaggcaccattcaaacacaatggatgattaaaccttttgatgaatgtcgacgtcttggactgaccccggagtgggaggcctctgtccgcaaaaccgcgcctaaggagacaggaatgttggtggcggaaattgttcttcccgagggcccggctgatgggaagcttcaagagggagatgtacttctcaaggtgaatggagagctgctcactcagtttgtgcgacttgatgatatactggattccaatgtcggcaaatctatccaccttcttatacagcgcggcggcgaggacctcgaattggaatgcagcgttggagacctacacgctatcacaccagatcgcttcgtcagcgtcgctggtggtacattccatgatctttcttaccagcaagcgcggctttatgctatcgccactcgtggcgtctacgtttgtgaggcagcaggatccttcaagattgaaaacactctgtcggggtggatcattgattcggtagacaagcggcctactcgaaacttgcaagagtttattgaggttatgaagacaataccagatcgctcgaaaattgttatttcttatagacatattcgagatctccatacacgaggcacaagcattatctacctcgatcgtcactggcatccaaagatgtcccttgcagtccgtaacgacaagaccggcttgtgggacttttcagatatcgccgaacctctacccgctgagccaccagttcctcgaaaagcggattttattcagttggacggggtcagtcagaccgctgccgctgatatcgttcgcagtttcgtccgggtgtcatgcaccatgccgctgaagctggatggattccctcagggcaaaaaaaccggatacggtttagtcattgatgcggagaagggccttgtcgttgtttctcgggctattgttccgtacgatctgtgtgatatcaatatcacagttgcagattcgattatcgtcactggcaaagtgattttcatgcatcctctgcaaaactataccattgtgcaatacgatccaagtctcgtccaggctccagtaaaaagtgcgcggctaagcacggaaaacatcaaacaaggtcaagacacaatatttgtcggattcaatcaaaatctgcgcattgttgtcgctaaaacaacagtcactgacatcaccaccgttgctatccccgccaacgcctctgctccacgttaccgggctatcaatcttgacgctatcacagtggacacggggctcagcagccagtgcactaacggtgtcttgctgagggatgacggcgttgtccaggctctttggctaaactatctaggagaacgaacgccaagctcgcataaagacgtcgagtatcatcttgggctcgcaacgccttctcttctacccataattagcaagatccaaggaggcgaaatcccaaagttgcgtatcttggatatggaaagctatgtcattcaaatgagtcaagctcgaataatgggcgtatcggagaagtggatcgagcaagtagcagcagccaacccttcccgacatcaattgttcatggtcagaaaactggacagccctcctccatctttcacgcatcatgagacagattccttgaaggagggagacatcattctcacactaaatggaaagcttattacgcgagtctccgagttcgacgttatgtacgacaacgaagttctcgacgcgttgatcgtccgaaacggacaggaaatgcacgtcaagttgcgtacggtgccaacggaagatttggagaccgatcgagcagtcatgttttgcggagctgtgttgcagaagccacatcacgctgtgcggcaacagatttcgaagcttcacagtgagatttacatcagtgctaggagtcgtggctcacctgcctaccagtatggattgtctccgacaaatttcatcacagcagtgaacggagtgcaaacccgcgatctcgacagctttgtccgcgaggtgaaaaagatcccggataacacatacttccgtcttcgggcggtcacattcgacaatgtaccgtgggttgtcacgatgaaaaagaatgatcactacttctccatgtcggaatatgtcaaagacccctcagtcccggctgggtggaaggtggtctcttatccgaaaaaagacgaagcttcggcggatacatccaacctgacagcagatgcgatggacgaaggaacagaaggtggcggaagtgatgcagagcctgatcaggattag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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