2024-03-29 20:33:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020114648 2682 bp mRNA linear INV 10-FEB-2017 DEFINITION Plasmodium reichenowi rhoptry-associated membrane antigen, putative partial mRNA. ACCESSION XM_020114648 VERSION XM_020114648.1 DBLINK BioProject: PRJNA329100 BioSample: SAMN04053640 KEYWORDS RefSeq. SOURCE Plasmodium reichenowi ORGANISM Plasmodium reichenowi Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania). REFERENCE 1 (bases 1 to 2682) AUTHORS Sundararaman,S.A., Plenderleith,L.J., Liu,W., Loy,D.E., Learn,G.H., Li,Y., Shaw,K.S., Ayouba,A., Peeters,M., Speede,S., Shaw,G.M., Bushman,F.D., Brisson,D., Rayner,J.C., Sharp,P.M. and Hahn,B.H. TITLE Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria JOURNAL Nat Commun 7, 11078 (2016) PUBMED 27002652 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2682) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2682) AUTHORS Sundararaman,S.A., Plenderleith,L.J., Liu,W., Loy,D.E., Learn,G.H., Li,Y., Shaw,K.S., Ayouba,A., Peeters,M., Speede,S., Shaw,G.M., Bushman,F.D., Brisson,D., Rayner,J.C., Sharp,P.M. and Hahn,B.H. TITLE Direct Submission JOURNAL Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_033652). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2682 /organism="Plasmodium reichenowi" /mol_type="mRNA" /strain="SY57" /isolation_source="peripheral blood" /host="Pan troglodytes ellioti" /db_xref="taxon:5854" /chromosome="7" /country="Cameroon: Centre Region" /collection_date="13-Feb-2013" gene <1..>2682 /locus_tag="PRSY57_0705500" /old_locus_tag="PRCDC_0705500" /note="ortholog of PRCDC_0705500" /db_xref="GeneID:24530305" CDS 1..2682 /locus_tag="PRSY57_0705500" /old_locus_tag="PRCDC_0705500" /inference="similar to DNA sequence:RATT:1" /codon_start=1 /product="rhoptry-associated membrane antigen, putative" /protein_id="XP_019970605.1" /db_xref="GeneID:24530305" /translation="
MNVLLLSLLVVQNIVTYLEQIKNGISGHYVEDHNIKNDNCISFSDYERSIKNFSISSHAENNYDNIINEYKKIKDINNNINILSSVHRKGRILYDNFLEINNLENEKKENDEKEDEYEYEDNDESFLETEEYEDNEDEKYNNDEDDYAESFIETDKYEDNEDDKYNKDEKYNKDEKYNKDEDDYAESFIETDEYEDNKDDKYNKDEDNYSESFIETDEYDDNEEEQYNKDEDGYADSFIETDHYGNNDDKNEEEEEEYNDQDNDYGYNFLETDEYDDSEEYDYDDNEYGESFLEKEEGEEMKDEEMKYDEMKDDQMNYDEMKDEEIKDDEMKYDEMKDEEMKYDEMKDEEMKYDEMKDDEMKNDEMKYDEMKDEQMKDEQMKDEQMKYDEMKDEQMEYEEFKNEDKKKEDMSYDEYMGYKKKEQEESYNTYNGNKKNKTSDSFLEKDLQGNSDDELHSTFYSKNVDKENYDNENIFYGYNDNDDESFLETDSYEEYEDEDKDAEDEYEESFLQNDEKKMVFYDLYNPEENESYYEKKQKKEEKEEKEQYLNKQNDMEDQEDNEEYKFEEENKEDLLDVQQDEELPSEGKQKGKGKSFDNEHLNEIQNVSNVHAFIQKDMKYLDDIIDEEQTIKEAVKKSAYKVNKKLGNNKKSQVILEQEPEENFEEDADEELNKLMEQEKNIVDKEIKNSKANKSNKKLQFNNTNKQNKMYMKNEYNNNTKNNKKNKFEQHNYDESYIDDDYEHNEEFNDNNQSEDMKETNELDEINDELLTDQGPNEDTLLENNNKIFDNKFVAHKIREKTISPHSYKKVSTKVQNKEDMENKEEKQLINDEAAMTAEELIELENTEDMNTPTMVETEEIDSDENGNKSSSSISYISSIVFLMVTLLYFMN"
misc_feature <478..1413 /locus_tag="PRSY57_0705500" /old_locus_tag="PRCDC_0705500" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:227596" misc_feature <982..1143 /locus_tag="PRSY57_0705500" /old_locus_tag="PRCDC_0705500" /note="pentapeptide MXKDX repeat protein; Region: penta_MxKDx; TIGR02953" /db_xref="CDD:131998" misc_feature <1090..1245 /locus_tag="PRSY57_0705500" /old_locus_tag="PRCDC_0705500" /note="pentapeptide MXKDX repeat protein; Region: penta_MxKDx; TIGR02953" /db_xref="CDD:131998" ORIGIN
atgaatgttctacttctgtctttgcttgttgtacaaaatatagtaacatatttagaacaaataaaaaatggtataagcggtcattatgtagaagatcataatattaagaatgataattgtattagcttttctgattatgagagatcaataaaaaacttttctatttcttctcatgcagaaaataattatgacaatataataaatgaatataaaaaaataaaagatattaacaacaatataaacatattatcatcagtacatagaaaaggaagaatattgtacgacaactttttagaaataaataacttggaaaatgaaaaaaaagagaatgatgagaaagaagatgaatatgaatatgaagataatgatgaaagctttttagaaactgaagaatatgaagataatgaagatgaaaaatataataatgatgaagatgattatgcagaaagttttattgagactgataaatatgaagataatgaagatgataaatataataaagatgaaaaatataataaagatgaaaaatataataaagatgaagatgattatgcagaaagttttattgagactgatgaatatgaagataataaagatgataaatataataaagatgaagataattattcagaaagctttattgagactgatgaatatgatgataatgaagaagaacaatataataaagatgaagatggttatgcagatagttttattgagacagaccattatggaaacaacgatgataaaaatgaagaagaagaagaagaatataatgatcaagataatgattatggatataactttttagaaactgacgaatacgatgatagcgaagaatatgattacgacgataacgaatacggagagagtttcctcgaaaaagaagaaggtgaagaaatgaaagatgaagagatgaaatatgacgagatgaaagatgatcaaatgaattatgacgagatgaaagatgaagaaatcaaagatgatgaaatgaaatatgacgagatgaaagatgaagagatgaaatatgacgagatgaaagatgaagagatgaaatatgacgagatgaaagatgacgagatgaaaaatgacgagatgaaatatgacgagatgaaagacgaacagatgaaagacgaacagatgaaagacgaacagatgaaatatgacgagatgaaagacgaacagatggaatatgaagaattcaaaaatgaagataaaaagaaggaagatatgtcttatgatgaatacatgggatataaaaagaaagaacaagaagaatcatataatacatacaatggtaataagaaaaataaaacatccgacagcttcctcgaaaaagatttacaaggaaattctgacgatgaattacatagtaccttttattccaaaaatgtagataaagaaaattatgataatgaaaatattttctatggttataatgataatgatgatgaaagctttttagaaactgattcttatgaagaatatgaagacgaagataaagatgctgaagatgagtatgaagaaagtttcttacaaaatgatgagaaaaaaatggtcttttatgatttatacaatccagaagaaaatgaatcttattatgaaaaaaaacaaaaaaaagaagaaaaagaagaaaaagaacaatatttgaacaaacaaaacgatatggaagaccaagaagataatgaagaatataaatttgaagaagaaaataaagaagaccttctagatgtccaacaagatgaagaattaccaagtgaaggaaaacaaaaaggaaaaggaaaatcattcgataatgaacatttgaatgaaatacaaaatgttagcaatgtacatgcatttatacaaaaagatatgaaatatttagatgatatcatagatgaagaacaaactattaaagaagccgtcaaaaaaagtgcttataaagtaaataagaaattaggaaataataaaaaatcacaagtgatactagaacaagaaccagaagaaaattttgaagaagatgctgatgaagaattaaataaactaatggaacaagaaaaaaatattgtagataaagaaatcaaaaatagtaaagcaaataaaagcaacaaaaaattacaattcaataacactaataaacaaaacaaaatgtatatgaaaaacgaatataataataacacaaaaaataataaaaaaaataaatttgaacaacacaattatgatgaatcatatatcgatgatgattatgaacataatgaagaatttaatgataataatcaaagcgaagatatgaaagaaacaaatgaactcgatgaaattaatgatgaactcttaactgatcaaggaccaaacgaagatacattattggaaaataataataaaattttcgataataaatttgtagcacacaaaataagagaaaaaactatatccccacacagttacaaaaaggtatctactaaagtacaaaacaaggaagacatggaaaataaggaagagaaacaattgataaatgatgaagccgctatgactgctgaagaattaatcgaattagaaaacacagaagatatgaatacacctacaatggtagaaacagaagaaattgattctgatgaaaatggaaataagtctagcagttcaatatcatacattagttctatagtattccttatggttacccttttatattttatgaattaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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