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2024-03-29 20:33:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_020114648            2682 bp    mRNA    linear   INV 10-FEB-2017
DEFINITION  Plasmodium reichenowi rhoptry-associated membrane antigen, putative
            partial mRNA.
ACCESSION   XM_020114648
VERSION     XM_020114648.1
DBLINK      BioProject: PRJNA329100
            BioSample: SAMN04053640
KEYWORDS    RefSeq.
SOURCE      Plasmodium reichenowi
  ORGANISM  Plasmodium reichenowi
            Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
            Plasmodiidae; Plasmodium; Plasmodium (Laverania).
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Sundararaman,S.A., Plenderleith,L.J., Liu,W., Loy,D.E., Learn,G.H.,
            Li,Y., Shaw,K.S., Ayouba,A., Peeters,M., Speede,S., Shaw,G.M.,
            Bushman,F.D., Brisson,D., Rayner,J.C., Sharp,P.M. and Hahn,B.H.
  TITLE     Genomes of cryptic chimpanzee Plasmodium species reveal key
            evolutionary events leading to human malaria
  JOURNAL   Nat Commun 7, 11078 (2016)
   PUBMED   27002652
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2682)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2682)
  AUTHORS   Sundararaman,S.A., Plenderleith,L.J., Liu,W., Loy,D.E., Learn,G.H.,
            Li,Y., Shaw,K.S., Ayouba,A., Peeters,M., Speede,S., Shaw,G.M.,
            Bushman,F.D., Brisson,D., Rayner,J.C., Sharp,P.M. and Hahn,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2016) Department of Medicine, Perelman School of
            Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610
            Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_033652).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Plasmodium reichenowi"
                     /mol_type="mRNA"
                     /strain="SY57"
                     /isolation_source="peripheral blood"
                     /host="Pan troglodytes ellioti"
                     /db_xref="taxon:5854"
                     /chromosome="7"
                     /country="Cameroon: Centre Region"
                     /collection_date="13-Feb-2013"
     gene            <1..>2682
                     /locus_tag="PRSY57_0705500"
                     /old_locus_tag="PRCDC_0705500"
                     /note="ortholog of PRCDC_0705500"
                     /db_xref="GeneID:24530305"
     CDS             1..2682
                     /locus_tag="PRSY57_0705500"
                     /old_locus_tag="PRCDC_0705500"
                     /inference="similar to DNA sequence:RATT:1"
                     /codon_start=1
                     /product="rhoptry-associated membrane antigen, putative"
                     /protein_id="XP_019970605.1"
                     /db_xref="GeneID:24530305"
                     /translation="
MNVLLLSLLVVQNIVTYLEQIKNGISGHYVEDHNIKNDNCISFSDYERSIKNFSISSHAENNYDNIINEYKKIKDINNNINILSSVHRKGRILYDNFLEINNLENEKKENDEKEDEYEYEDNDESFLETEEYEDNEDEKYNNDEDDYAESFIETDKYEDNEDDKYNKDEKYNKDEKYNKDEDDYAESFIETDEYEDNKDDKYNKDEDNYSESFIETDEYDDNEEEQYNKDEDGYADSFIETDHYGNNDDKNEEEEEEYNDQDNDYGYNFLETDEYDDSEEYDYDDNEYGESFLEKEEGEEMKDEEMKYDEMKDDQMNYDEMKDEEIKDDEMKYDEMKDEEMKYDEMKDEEMKYDEMKDDEMKNDEMKYDEMKDEQMKDEQMKDEQMKYDEMKDEQMEYEEFKNEDKKKEDMSYDEYMGYKKKEQEESYNTYNGNKKNKTSDSFLEKDLQGNSDDELHSTFYSKNVDKENYDNENIFYGYNDNDDESFLETDSYEEYEDEDKDAEDEYEESFLQNDEKKMVFYDLYNPEENESYYEKKQKKEEKEEKEQYLNKQNDMEDQEDNEEYKFEEENKEDLLDVQQDEELPSEGKQKGKGKSFDNEHLNEIQNVSNVHAFIQKDMKYLDDIIDEEQTIKEAVKKSAYKVNKKLGNNKKSQVILEQEPEENFEEDADEELNKLMEQEKNIVDKEIKNSKANKSNKKLQFNNTNKQNKMYMKNEYNNNTKNNKKNKFEQHNYDESYIDDDYEHNEEFNDNNQSEDMKETNELDEINDELLTDQGPNEDTLLENNNKIFDNKFVAHKIREKTISPHSYKKVSTKVQNKEDMENKEEKQLINDEAAMTAEELIELENTEDMNTPTMVETEEIDSDENGNKSSSSISYISSIVFLMVTLLYFMN"
     misc_feature    <478..1413
                     /locus_tag="PRSY57_0705500"
                     /old_locus_tag="PRCDC_0705500"
                     /note="Midasin, AAA ATPase with vWA domain, involved in
                     ribosome maturation [Translation, ribosomal structure and
                     biogenesis]; Region: MDN1; COG5271"
                     /db_xref="CDD:227596"
     misc_feature    <982..1143
                     /locus_tag="PRSY57_0705500"
                     /old_locus_tag="PRCDC_0705500"
                     /note="pentapeptide MXKDX repeat protein; Region:
                     penta_MxKDx; TIGR02953"
                     /db_xref="CDD:131998"
     misc_feature    <1090..1245
                     /locus_tag="PRSY57_0705500"
                     /old_locus_tag="PRCDC_0705500"
                     /note="pentapeptide MXKDX repeat protein; Region:
                     penta_MxKDx; TIGR02953"
                     /db_xref="CDD:131998"
ORIGIN      
atgaatgttctacttctgtctttgcttgttgtacaaaatatagtaacatatttagaacaaataaaaaatggtataagcggtcattatgtagaagatcataatattaagaatgataattgtattagcttttctgattatgagagatcaataaaaaacttttctatttcttctcatgcagaaaataattatgacaatataataaatgaatataaaaaaataaaagatattaacaacaatataaacatattatcatcagtacatagaaaaggaagaatattgtacgacaactttttagaaataaataacttggaaaatgaaaaaaaagagaatgatgagaaagaagatgaatatgaatatgaagataatgatgaaagctttttagaaactgaagaatatgaagataatgaagatgaaaaatataataatgatgaagatgattatgcagaaagttttattgagactgataaatatgaagataatgaagatgataaatataataaagatgaaaaatataataaagatgaaaaatataataaagatgaagatgattatgcagaaagttttattgagactgatgaatatgaagataataaagatgataaatataataaagatgaagataattattcagaaagctttattgagactgatgaatatgatgataatgaagaagaacaatataataaagatgaagatggttatgcagatagttttattgagacagaccattatggaaacaacgatgataaaaatgaagaagaagaagaagaatataatgatcaagataatgattatggatataactttttagaaactgacgaatacgatgatagcgaagaatatgattacgacgataacgaatacggagagagtttcctcgaaaaagaagaaggtgaagaaatgaaagatgaagagatgaaatatgacgagatgaaagatgatcaaatgaattatgacgagatgaaagatgaagaaatcaaagatgatgaaatgaaatatgacgagatgaaagatgaagagatgaaatatgacgagatgaaagatgaagagatgaaatatgacgagatgaaagatgacgagatgaaaaatgacgagatgaaatatgacgagatgaaagacgaacagatgaaagacgaacagatgaaagacgaacagatgaaatatgacgagatgaaagacgaacagatggaatatgaagaattcaaaaatgaagataaaaagaaggaagatatgtcttatgatgaatacatgggatataaaaagaaagaacaagaagaatcatataatacatacaatggtaataagaaaaataaaacatccgacagcttcctcgaaaaagatttacaaggaaattctgacgatgaattacatagtaccttttattccaaaaatgtagataaagaaaattatgataatgaaaatattttctatggttataatgataatgatgatgaaagctttttagaaactgattcttatgaagaatatgaagacgaagataaagatgctgaagatgagtatgaagaaagtttcttacaaaatgatgagaaaaaaatggtcttttatgatttatacaatccagaagaaaatgaatcttattatgaaaaaaaacaaaaaaaagaagaaaaagaagaaaaagaacaatatttgaacaaacaaaacgatatggaagaccaagaagataatgaagaatataaatttgaagaagaaaataaagaagaccttctagatgtccaacaagatgaagaattaccaagtgaaggaaaacaaaaaggaaaaggaaaatcattcgataatgaacatttgaatgaaatacaaaatgttagcaatgtacatgcatttatacaaaaagatatgaaatatttagatgatatcatagatgaagaacaaactattaaagaagccgtcaaaaaaagtgcttataaagtaaataagaaattaggaaataataaaaaatcacaagtgatactagaacaagaaccagaagaaaattttgaagaagatgctgatgaagaattaaataaactaatggaacaagaaaaaaatattgtagataaagaaatcaaaaatagtaaagcaaataaaagcaacaaaaaattacaattcaataacactaataaacaaaacaaaatgtatatgaaaaacgaatataataataacacaaaaaataataaaaaaaataaatttgaacaacacaattatgatgaatcatatatcgatgatgattatgaacataatgaagaatttaatgataataatcaaagcgaagatatgaaagaaacaaatgaactcgatgaaattaatgatgaactcttaactgatcaaggaccaaacgaagatacattattggaaaataataataaaattttcgataataaatttgtagcacacaaaataagagaaaaaactatatccccacacagttacaaaaaggtatctactaaagtacaaaacaaggaagacatggaaaataaggaagagaaacaattgataaatgatgaagccgctatgactgctgaagaattaatcgaattagaaaacacagaagatatgaatacacctacaatggtagaaacagaagaaattgattctgatgaaaatggaaataagtctagcagttcaatatcatacattagttctatagtattccttatggttacccttttatattttatgaattaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]