2024-05-19 15:14:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_019776568 1503 bp mRNA linear INV 28-DEC-2016 DEFINITION PREDICTED: Branchiostoma belcheri UPF0711 protein C18orf21 homolog (LOC109475800), mRNA. ACCESSION XM_019776568 VERSION XM_019776568.1 DBLINK BioProject: PRJNA358734 KEYWORDS RefSeq. SOURCE Branchiostoma belcheri (Belcher's lancelet) ORGANISM Branchiostoma belcheri Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017803965.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Branchiostoma belcheri Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1503 /organism="Branchiostoma belcheri" /mol_type="mRNA" /isolate="BF01" /isolation_source="seawater" /db_xref="taxon:7741" /chromosome="Unknown" /sex="male" /cell_type="sperm cells" /tissue_type="gonad" /dev_stage="adult" /country="China: Xiamen Bay" /collection_date="Aug-2008" /breed="outbred" gene 1..1503 /gene="LOC109475800" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:109475800" CDS 3..584 /gene="LOC109475800" /codon_start=1 /product="UPF0711 protein C18orf21 homolog" /protein_id="XP_019632127.1" /db_xref="GeneID:109475800" /translation="
MPDHMTCQSCGNLLLPGNHTVRLRPKRKMTSATRRVMSKVSKGQMASASEVKLLKKFQERKNHLVVQCSVCQGKAVIPAATRKHVVMATSTSHGSPAGTPVVSRRIAKATRRLVSTPHTSSSAFLSTPDSSTKVVGSSPGTPGSGLRVPGSSPGSSGRKGKQQKQRHAQLRHMLSQQSLGDTSTSLSDFLQSL"
misc_feature 18..536 /gene="LOC109475800" /note="Domain of unknown function (DUF4674); Region: DUF4674; pfam15719" /db_xref="CDD:434882" ORIGIN
acatgccagatcacatgacctgtcaatcatgtggtaacttgctgttgcctggcaaccacacagtgagattacgccctaagaggaagatgacctcagctacccgacgtgtcatgtcaaaggtcagcaagggtcaaatggcatcggcatcggaggtcaagctactaaagaaatttcaagaaaggaaaaaccacttggttgttcaatgttcagtctgtcagggaaaggcggtcatccctgcagccaccaggaaacacgttgtcatggcaacatcaacgtcacatggaagtccagcaggaactcctgtggtctccaggagaattgccaaggcaacccgaaggcttgtttcaactcctcacaccagcagttctgcatttctgagcaccccagactcgagtacaaaggttgtgggttcgagtcctggcactcctggatcaggtctgagggtcccgggttctagtcccggctcttcaggcaggaaaggcaagcagcagaaacagagacacgcccagctgagacacatgctatcccagcagtccttgggggacaccagtacttccctctccgactttctccagtctttatgacattttgtttgttttgcataactgataaacaagctttaggtgtaacacaacagttttgtactgtaagtacaagctgtgttaaactgggctgtaagtttgaaccactcacacagagaaggactcttttcaataacatggtcgaggtgtgactctcctcaaacatggggcctctggcattatgtcccttctgatccagaaggacatccctaaccaaagctagggaccatgtatgtgtaagaaatatgtgtatagaagatttattaggactttaaatgatgtaaatttttatctttttgatatacacgtacttgtatgttgtctgaccctcaccgaccaaatgaatgaatgagtgaatgaatgaatgaatggattaatgaatgaatggatgaatctcagacctccattaaatatttagaccttgtgtgatggtgactgtgtcctcttcccattcaccatggagtctacaagtctttctctattttgcaaggaaaataacaccagctgtcagctgcctagtaggtcaggtcacgaaaaacaacaaaaacagcaagcactaccagttctccctcagggacagatatccattacagcctcaaaaatttatgttttttcggtagttataagaagaatagttttttctttgtctgtaagtttagagaaatcgggatgaagtttgaatacatataccacggagtgacagatacattaccctcactttgtggcccataaatccttgatagtattctgggtatgttgtatgttctttcaaagacgtaagaaatgctatgttcgtgttacatctcgcaataaaccaaatagaacagtcataaaattgtgcccaagttgataaagacagtaaatgaatggagaacacaatgtcgtgatggtagataaagcaataaagtaaaccgtttcaaga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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