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2024-03-29 09:07:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_019668890            6588 bp    mRNA    linear   MAM 20-DEC-2016
DEFINITION  PREDICTED: Hipposideros armiger ATPase copper transporting beta
            (ATP7B), transcript variant X2, mRNA.
ACCESSION   XM_019668890
VERSION     XM_019668890.1
DBLINK      BioProject: PRJNA357596
KEYWORDS    RefSeq.
SOURCE      Hipposideros armiger (great roundleaf bat)
  ORGANISM  Hipposideros armiger
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera;
            Hipposideridae; Hipposideros.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017731891.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Hipposideros armiger Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6588
                     /organism="Hipposideros armiger"
                     /mol_type="mRNA"
                     /isolate="ML-2016"
                     /db_xref="taxon:186990"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="muscle"
     gene            1..6588
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:109396763"
     CDS             65..4348
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X2"
                     /protein_id="XP_019524435.1"
                     /db_xref="GeneID:109396763"
                     /translation="
MKQSFAFDNAGYEGSLDGVCPPQTSTGTISILGMTCQSCVKSIEGRISSLKGIVSIKVSLEQGSATVKYVPSVMSLPQVCCQIEDMGFEASIAEGKAGSWPSRSSPSLEAMVKLRVEGMTCQSCVSSIEGKIGKLQGVVRVRVSLSNQEAVITYQPYLIQPQDLRDHVNDMGFEAVIKNKVAPVSLGPIDIGRLQSTNPKTPSTSINQNASNSKTVGHQGSHVVMLQLRVDGMHCTSCVRNIEENIGQLPGVQNIQVSLENRTAQVQYDPSRISPGALQRAIEALPPGNFKVSLPDGAEGSGTDNRSSTHHSPAPCQSTQVQGTCCTLVLAIAGMTCASCVQSIEGLISQREGVQQISVSLAEATGAILYDPSVINPEELRAAVEDMGFEASVVSANCSGSDSAANSTAQTAAGTPVSTQEVALHAEGPLKNHSPGHSAKSPQASATVAPQRCFLQIRGMTCASCVSNIERNLQKETGILSVLVALMAGKAEVKYNPEVIQPLEIAQLIQDLGFEAAVMEDYAGSDGDIELIITGMTCASCVYNIESKLVRTNGVTHASVSLATSKAQVKFDPEIIGPRDIVKIIEEIGFHASPAQRNPNAHHLDHKVEIKQWKKSFLCSLVFGIPVMGLMIYMLIPSSEPHESMVLDHNIIPGLSILNLIFFILCTFVQFLGGWYFYVQAYKSLRHGAANMDVLIVLATSIAYVYSVVILVVAIAEKAERSPVTFFDTPPMLFVFIALGRWLEHVAKSKTSEALAKLMSLQATEATVVTLGEDNVIIREEQVPTELVQRGDVIKVVPGGKFPVDGKVLEGNSMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLVNATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADQFSGYFVPFIIIISTLTLVVWIIIGFIDFGVVQKYFPNPSKHISQAEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKINTVMFDKTGTITHGVPKVMRVLLLVDTATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTEALGYCTDFQAVPGCGIGCKVSSVEGILAHREHLSEQAAPLNGVGSVPVETDVAPQTFSVLIGNREWMRRNGLAISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAAYTLKSMGVDVVLITGDNRKTARAIAAQVGINKVFAEVLPSHKVAKVQELQKEGKKVAMVGDGINDSPALARADVGIAIGTGTDVAIEAADIVLIRNDLLDVVAGIHLSKRTVWRIRLNLVLALIYNMVGIPIAAGVFMPFGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYTAQAQGHMKPLTESQVSVHVGMDDRRWDSPRATPWDQVSYISQVSLSSLKSDKLSRHSATADDGGDKWSLLLNDRDEEQCI"
     misc_feature    146..337
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(164..172,179..181)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    401..589
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(419..427,434..436)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    743..919
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(761..769,776..778)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1049..1240
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1067..1075,1082..1084)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1427..1615
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1442..1450,1457..1459)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1652..1843
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1670..1678,1685..1687)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1907..4012
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(2900..2902,2906..2908,3941..3943)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3032..3040,3242..3244,3392..3400,3488..3490,
                     3608..3616,3674..3676,3683..3685,3692..3694,3749..3751,
                     3758..3760)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
ORIGIN      
cttaggagcacactgtgaaatcctgtctaagcttcctttgcctgctaggggccgggaaccagaaatgaagcagagttttgcctttgacaatgctggctatgaaggtagtctggatggtgtgtgccctccgcagacatccactggcaccatcagcatattgggcatgacctgccagtcatgtgtaaagtcaattgagggcaggatttccagtttgaaaggcattgtgagcattaaggtttccctggaacaaggcagtgcaactgtgaaatatgtgccgtcggtcatgagcctgccacaggtttgctgtcaaattgaggacatgggctttgaggccagcatcgcagaaggaaaggctggctcctggccttccaggtcctcgccctccctggaggccatggtcaagctgcgagtggagggcatgacttgccagtcctgtgtcagctccatagaaggcaagatcgggaaactgcaaggagtagtgagagtcagagtctcactgagcaaccaagaggcagtcatcacatatcagccttatcttattcaaccccaagacctcagggaccatgtaaacgacatggggtttgaagctgtcatcaagaacaaagtggctcccgtgagcctgggaccaattgatattgggcggttacagagcaccaacccaaagacaccttcaacttctattaaccagaatgccagtaactcaaagaccgtgggacaccaagggagccatgtggtcatgctgcaactgagagtagatggaatgcactgtacttcttgtgtccggaatattgaagaaaatattggccaactcccaggagttcaaaatattcaagtgtccttggagaacagaactgcccaagtacagtatgacccttctcgtatctccccaggggctctgcagagggccattgaggctcttccaccagggaactttaaagtttctcttcctgatggagcagaagggagtgggacagataacaggtcttccacacaccactccccagccccctgccagagtacccaggtgcaaggcacgtgctgtaccctggtgcttgccattgccggcatgacctgtgcgtcctgtgtccaatccatcgaaggcttgatctcccaaagggaaggcgtgcagcaaatatcagtctcgttggccgaagcgactggagcgattctctatgatccctctgtaattaacccagaagaactccgagctgctgtagaagacatggggtttgaggcttcggtcgtttctgcaaactgttctggaagcgacagtgcagccaattccacagcgcaaactgcagctggcacacccgtgtccacacaggaagtggctctccacgctgaggggcccctgaaaaaccatagccctggccactcggcaaagtccccgcaagcctccgcaacagtggcaccacagaggtgctttctacagatcagaggcatgacctgtgcgtcctgcgtgtctaacatagagagaaacctgcagaaagaaactggtattctctccgtgctggttgccttgatggccggaaaagcagaggttaagtataatccggaagtcatccagccacttgagatagctcagctcatccaggacttgggctttgaggcggcagtaatggaagactacgcaggctcagatggcgacattgagctgatcatcaccgggatgacctgtgcttcctgtgtgtacaacatagagtctaaacttgtaaggacgaatggcgtcacccatgcctccgtatcccttgcaaccagcaaagcccaggtgaaatttgatcctgaaattatcggtccacgagatattgtcaaaattattgaggaaatcggctttcatgcttctccagcccagagaaaccccaacgctcatcacttggaccacaaggtcgaaataaagcagtggaagaagtctttcctgtgcagcctggtgtttggcatccctgttatgggtttaatgatctatatgttgataccaagcagtgaacctcacgagtctatggtcctggaccacaacatcattccgggactgtccattctaaatctcatcttctttatcttgtgtacctttgtccagttcctcggtgggtggtacttctatgttcaggcctacaaatctctgagacatggggcagccaacatggatgtgctcatcgtgctggccacgagcatcgcctacgtctactctgtcgtcattctggtggtggccattgccgagaaggctgagaggagccctgtgactttctttgacacacctcccatgctctttgtgttcattgccctgggacggtggctggaacacgtggcaaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagccacagaagccactgtcgtgacccttggcgaggacaacgtaatcatcagagaagagcaagtacccacggagctggtgcagcggggtgatgtcatcaaggttgttcccgggggaaagttcccagtggacgggaaagtcctggaaggcaattccatggctgacgagtccctcatcacaggagaggccatgcctgtcaccaagaaacccggaagcacagtgattgccgggtctataaacgcacatggctctgtgctcgttaatgccacccatgtgggcaacgacaccactttggctcagattgtgaaactggtggaagaggctcagatgtcaaaggcacccattcagcaactggctgaccagtttagtggatattttgtcccatttatcatcatcatttcaactttgacgttggtggtatggattataatcggttttatcgattttggtgttgttcagaaatactttcctaaccccagcaagcatatctcccaggcagaggtgatcatccggtttgcgttccagacgtccatcacagtgctgtgcattgcctgcccctgctctctgggcctggccacacccacggcggtcatggtgggcactggcgtggctgcccagaacggcatcctcatcaagggaggcaagcccctggagatggcccacaagataaatactgtgatgtttgacaaaactggcaccattacccacggggtccccaaggtcatgcgggtcctcctgcttgtggacacagccacactgcccctcaggaaggttcttgctgtggtggggactgcggaggccagcagcgagcaccccttaggcgtggctgtcaccaaatactgcaaagaggaacttggaacagaggccttgggatactgcacggacttccaggcggtgccaggttgtggaatcggctgtaaagtcagcagtgtggaaggcatcctggcccatcgcgagcacctgagcgaacaggccgctcccctgaacggggttggcagtgttcctgtggaaacagatgtggccccccagaccttctccgtgctgattggaaaccgagaatggatgaggcgcaacggcttagccatttccagcgacgtcagtgacgctatgacagatcacgagatgaagggccagaccgccatcttggtggctattgacggggtcctctgtgggatgatcgccattgcagatgccgtcaagcaggaggccgccctggctgcgtacacgctgaagagcatgggtgtggacgtggttctgatcacgggggacaaccgcaagacagctcgagctattgccgcccaggttggcatcaacaaagtctttgcagaggtgctgccttctcacaaggtggccaaggtccaggagctccagaaggaagggaagaaagtggccatggtgggagacgggattaacgactccccggccttggcccgggctgacgtgggcatcgccatcggcacaggcacagatgtcgccatcgaggcggctgacattgttctcatcagaaacgacttgctggatgttgttgctggcattcacctctccaagaggactgtctggagaatacggctcaacctggtgctggcactgatttataacatggttgggatacccatcgcagcaggtgtcttcatgccctttgggattgtgctgcagccatggatgggctcggcggccatggcagcctcctccgtgtctgtggttctctcatctctgcagctcaagtgctataagaagccagacctggagaggtacacagcccaggcccagggccacatgaagcccctgacggagtcccaagtcagtgtgcatgtcggcatggacgaccggcgatgggactcccccagggccacgccctgggaccaggtcagctacatcagccaggtgtcgctgtcctccctgaagtccgacaagctgtctcggcacagcgccacagctgacgacggtggagacaagtggtctctgctcctgaatgacagggacgaggagcagtgcatctgaaagctccaggccgatgcagactcatgggcccatctcccagccgagcagctactcgagccccacaggggcagcgccagcagccagcagcagggtgggcgaagcctcggggacttccactccctggatattctagatcattcctccctgcagcacgtggccttggacagatatggctccccagtaggaccaccctgcctgggtcccacaggcacaggctgagacctcacccatgctgttggcgtgggcttgttggactctagaagagggaggacagccagccctccttacagacctctgcttcagtgtttgagaagactacttgtgaaatgaggaaaatttcatcaggaccaaaaacttagctgggcctttccatagagctcatgaaaaacctcggtgctgtcctctttggtacaatgaccacatgcgtcacatgtctgaaaccacaatttacctcaagtgcacctgtttgtttctgctggtaaaatctcttccttttctgtccttgacactgggggcatggcctccccatcatctgtcaggtcaggatgactgacgtcctcccggtccatgccgctgctctcaggtgcttctctaagcgcaggcacgtgtgtgcacttctacctgaatcttctcactcacacgcttggcccaagagcttgtcaggcttcccttcaggttgaggggagttctttcatgcttacgagactctcttcacagagtcatggcttctcactccacactcttgctgcccagctggagtaagggtctcagagcctgagacttgagaaatccagcttcctgtggggttcaggtgcctgggacccggagaggcctgtggtgcttaaagcaggtgtcctgtggggaaggctcatgcataggaacctcctttgtggcttcaggagcttcgattatattgttcacctccaaggaaaacagtgatacccaaattagaggaaatcacagttcttttcatgagcttctacttctgcatgttgagttggtgccttaggaaaggggtgattgcaatttcccaaagggaagtctgtctctaactttcagtggctctttgtgattgcatgacgttggaggggcaggattgtagctagttttagactctgaatttggtgttgattgacagaccacatgagaatagacgagtagaatcagaatcttagaataagtagagcaaagcctattctaaattctaaatgtgctgcctgtctaaatcctaaggtgaatcccttgtcatacacaaaaaataattttatttatcgaatgtgttattttccaaggcaatgtaaacactttttataagttacctctaatgctcccaacaaaccaacaaagtagatattattgtccacctttcacaagtgggaaaataggctcagagaggctaagtatcctccccaggatcacacagccagtatatatgccagaacaggggtctgaatccatgtctgttggctctgaagtcttttctttatctcggctccactttgaatattttgcttgataagaatacacaagaaaaagccccttgctcctggaagaacaaatctgtcaggtgatgtattgatgtggactgaactttgatcatgaggtcatctcacttgatgacctcatggtcaagttcatttcccttggatggtttgttttcacttttgcatataattctgtttttgctgggtcttatcctctaaaatccacgtgcagggttctgtttctattgttatcaatctcccttttcctccccagcaccttcctgccatgtgtccccgctggtgtcatctttattctttgctgtgcttggggaatgtttctcgttttctaactaggctaatcatcatctaaagaatctcattgtattgatttttcaaaaaacttttaggaccgtaaatattgtgtttatacagacataaaaatatttgtataattgtacagaaaaatcaacttttagatgttcgaagtgtaggaatttttttttggttagataagaacaatttctacttcaaaaactttccgtgctatattagaataaagtttctttttcatcagaagatgtgcttttggctggccgtgtctgagtgaggagtgtggtgaagggtgggcagtgctgtcttcagggagaactgcaagggactggctttgcgctcggtgccttttcgggggagagagggatggtttctttctttcttttaagatttttattaaaaatatagttcgcgtacaatattcta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]