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Previous release (v1)
2026-05-14 01:42:18, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_019300941 424 bp mRNA linear PLN 29-NOV-2016
DEFINITION PREDICTED: Ipomoea nil heavy metal-associated isoprenylated plant
protein 32-like (LOC109153142), mRNA.
ACCESSION XM_019300941
VERSION XM_019300941.1
DBLINK BioProject: PRJNA344313
KEYWORDS RefSeq; includes ab initio.
SOURCE Ipomoea nil (Japanese morning glory)
ORGANISM Ipomoea nil
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae;
Ipomoeeae; Ipomoea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_017616696.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Ipomoea nil Annotation Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 11% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..424
/organism="Ipomoea nil"
/mol_type="mRNA"
/cultivar="Tokyo-kokei standard"
/db_xref="taxon:35883"
/chromosome="Unknown"
gene 1..424
/gene="LOC109153142"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 88% coverage of the annotated
genomic feature by RNAseq alignments"
/db_xref="GeneID:109153142"
CDS 20..424
/gene="LOC109153142"
/codon_start=1
/product="heavy metal-associated isoprenylated plant
protein 32-like"
/protein_id="XP_019156486.1"
/db_xref="GeneID:109153142"
/translation="
MEPYADASCILRVDINCDACKFKMIEVISSVAGVYSISIDAEENLVKICGEVDPNRLLSALAREGKHAKIVMANLKHPQLRLHPRYGYIQGHDDLGNGGGHGYHPHQAFPIRGALPHHSYYPYHYPSCYIRFGN"
misc_feature 50..226
/gene="LOC109153142"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(62..70,77..79)
/gene="LOC109153142"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
ORIGIN
gctgttcactcattcaacaatggagccatacgctgacgccagttgtattctgagagtggatattaattgtgatgcgtgcaaattcaaaatgattgaagttataagttcggtcgcgggtgtgtattcaattagcattgatgcagaggaaaatttggtaaaaatttgtggggaggtggaccctaatcgtctcttgagtgcattagcaagagaaggtaaacatgcaaaaatagtaatggctaacctaaaacaccctcaactaagactacatccaagatatggctatatccaaggtcacgatgaccttggcaatggaggcggccatggctatcaccctcaccaagccttccctataagaggggcactccctcaccattcatactatccataccattatccatcgtgctatataaggtttggaaattag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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