2024-03-29 19:35:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018932568 1893 bp mRNA linear INV 03-NOV-2016 DEFINITION PREDICTED: Bactrocera latifrons mitochondrial pyruvate carrier 2-like (LOC108968499), transcript variant X1, mRNA. ACCESSION XM_018932568 VERSION XM_018932568.1 DBLINK BioProject: PRJNA351211 KEYWORDS RefSeq. SOURCE Bactrocera latifrons ORGANISM Bactrocera latifrons Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017534442.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bactrocera latifrons Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1893 /organism="Bactrocera latifrons" /mol_type="mRNA" /isolate="USDA-ARS-PBARC rearing strain" /isolation_source="USDA-ARS-PBARC rearing colony" /db_xref="taxon:174628" /chromosome="Unknown" /tissue_type="whole fly" /country="USA: USDA-ARS-PBARC, Hilo, Hawaii" /collection_date="2015" gene 1..1893 /gene="LOC108968499" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:108968499" CDS 245..706 /gene="LOC108968499" /codon_start=1 /product="mitochondrial pyruvate carrier 2-like" /protein_id="XP_018788113.1" /db_xref="GeneID:108968499" /translation="
MASSAPPAAAPPPPPPPSATTAGKGFPNKIYNALIGSVDKHVPEKLRPLWQHPAGPKTVFFWAPLFKWSLVIAGLSDLARPAETLSVPQCAALAATGIIWSRYSLVIIPKNYSLFAVNLFVGLTQVVQLGRAYNYQMEQNKLAGEQPAKKNEL"
misc_feature 377..703 /gene="LOC108968499" /note="Uncharacterized protein family (UPF0041); Region: MPC; pfam03650" /db_xref="CDD:427425" ORIGIN
ttgggttgttgtgctggaatgtaattaaatgtggttagatatttaaaaagtacatatgatttcagttcttcactatctggcaaacggtgaggaagtcaacaccagtaattgttcaagtaaggtaccttgtataccttgcctttgggattaagttagaaaattgtaaatacgagtaactaatacaaaatatctaatctcaaacgaaagaaaagtctgaaacaagtgcttagataacaacaataaaatggcttcctcagcacctccagcagcagcaccaccaccaccacctccgccatcagccactaccgctggcaaaggatttcccaacaaaatttacaatgctcttattggctcagtggacaaacatgtgcccgaaaagttgcgaccattgtggcagcatccagctggaccaaaaactgttttcttctgggcaccacttttcaaatggtctcttgtcatagctggtctcagtgacttggcgcgtccggctgaaactctttcggtgccccagtgtgcagcacttgccgccaccggtatcatttggtcacgttactccttggttatcattcccaaaaactacagtctgtttgccgtcaatttatttgtcggtttgacacaagtcgttcaactgggccgcgcatacaattaccaaatggaacagaacaaactggcaggtgaacaacctgcgaagaagaacgaattgtaaatggctttaatttcgatttgtatataatattcaaatgtttgtacatagacatgtatataatgttaatgagacgcatgcaacctacattaattatcgatcactttgcgatacttgcagtcaatacatactatttttgaatatgtatacaatccactttacatatatgtatgagtgataaaaagtaatttcggtcaaaaacacatcaggtggtggaggtaataaaataaaaataaatagagcaaacgcaaagctcctacatatacatttgtacgtatgtgtgtatgcatgtttgcatttttgtatacccacatgcataagtaagttacgaattgcacttgaatgcagaaagtcaatgtcaatgccgcaacatccacgtgacttcgccatatactcgtactatacagaaatatacacacatgcatgcatatgtaaatggcttagccaaacaacaaaaccgttggccagtaaaagtgctcaatatgtcgaagcagtcatttattattatataatagtactacaaaaactggtgatataattaagtagtgaattgtaaattaattaatactatcatatccgactacactgaagctgaattaattttgaatttaaactataactaagttaagaaatttaaacaaaaagaccatcacaaaacagcacaaaatatgcaaataaaaaggtacacaatttggacaaaagtttcccaaagaaagtaaaattgtttgttttttcttccttttaatcttttgtcaataacgtaaaactattgcatattaaatagtaattttttctcgtttaatcaatttgtcaatgcagaccttaacacacatgccaaagagtttaaagtttgtatttcaatcaataataaagaacaggtttgagccaaagataaaacgaaaaatatacatacatatgtacatttacatagtaatacagatatttatgtacatacataagtcgtaagaggctgaacaagttacatagcatagcatagcatagtacccaattagcatctaacatggaaacagtcaaatgtagataaatgtgttaattatatgtacatacatgcatatgtattttaggcaatgagaacttttgtttgtagaattacgagtaaaagtaaaaaaaaaacttttgcttgtgtactttaagtctcaataaagatacgaacgaaacgagtttacgtg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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