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2024-03-29 19:35:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_018932568            1893 bp    mRNA    linear   INV 03-NOV-2016
DEFINITION  PREDICTED: Bactrocera latifrons mitochondrial pyruvate carrier
            2-like (LOC108968499), transcript variant X1, mRNA.
ACCESSION   XM_018932568
VERSION     XM_018932568.1
DBLINK      BioProject: PRJNA351211
KEYWORDS    RefSeq.
SOURCE      Bactrocera latifrons
  ORGANISM  Bactrocera latifrons
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017534442.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Bactrocera latifrons Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Bactrocera latifrons"
                     /mol_type="mRNA"
                     /isolate="USDA-ARS-PBARC rearing strain"
                     /isolation_source="USDA-ARS-PBARC rearing colony"
                     /db_xref="taxon:174628"
                     /chromosome="Unknown"
                     /tissue_type="whole fly"
                     /country="USA: USDA-ARS-PBARC, Hilo, Hawaii"
                     /collection_date="2015"
     gene            1..1893
                     /gene="LOC108968499"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:108968499"
     CDS             245..706
                     /gene="LOC108968499"
                     /codon_start=1
                     /product="mitochondrial pyruvate carrier 2-like"
                     /protein_id="XP_018788113.1"
                     /db_xref="GeneID:108968499"
                     /translation="
MASSAPPAAAPPPPPPPSATTAGKGFPNKIYNALIGSVDKHVPEKLRPLWQHPAGPKTVFFWAPLFKWSLVIAGLSDLARPAETLSVPQCAALAATGIIWSRYSLVIIPKNYSLFAVNLFVGLTQVVQLGRAYNYQMEQNKLAGEQPAKKNEL"
     misc_feature    377..703
                     /gene="LOC108968499"
                     /note="Uncharacterized protein family (UPF0041); Region:
                     MPC; pfam03650"
                     /db_xref="CDD:427425"
ORIGIN      
ttgggttgttgtgctggaatgtaattaaatgtggttagatatttaaaaagtacatatgatttcagttcttcactatctggcaaacggtgaggaagtcaacaccagtaattgttcaagtaaggtaccttgtataccttgcctttgggattaagttagaaaattgtaaatacgagtaactaatacaaaatatctaatctcaaacgaaagaaaagtctgaaacaagtgcttagataacaacaataaaatggcttcctcagcacctccagcagcagcaccaccaccaccacctccgccatcagccactaccgctggcaaaggatttcccaacaaaatttacaatgctcttattggctcagtggacaaacatgtgcccgaaaagttgcgaccattgtggcagcatccagctggaccaaaaactgttttcttctgggcaccacttttcaaatggtctcttgtcatagctggtctcagtgacttggcgcgtccggctgaaactctttcggtgccccagtgtgcagcacttgccgccaccggtatcatttggtcacgttactccttggttatcattcccaaaaactacagtctgtttgccgtcaatttatttgtcggtttgacacaagtcgttcaactgggccgcgcatacaattaccaaatggaacagaacaaactggcaggtgaacaacctgcgaagaagaacgaattgtaaatggctttaatttcgatttgtatataatattcaaatgtttgtacatagacatgtatataatgttaatgagacgcatgcaacctacattaattatcgatcactttgcgatacttgcagtcaatacatactatttttgaatatgtatacaatccactttacatatatgtatgagtgataaaaagtaatttcggtcaaaaacacatcaggtggtggaggtaataaaataaaaataaatagagcaaacgcaaagctcctacatatacatttgtacgtatgtgtgtatgcatgtttgcatttttgtatacccacatgcataagtaagttacgaattgcacttgaatgcagaaagtcaatgtcaatgccgcaacatccacgtgacttcgccatatactcgtactatacagaaatatacacacatgcatgcatatgtaaatggcttagccaaacaacaaaaccgttggccagtaaaagtgctcaatatgtcgaagcagtcatttattattatataatagtactacaaaaactggtgatataattaagtagtgaattgtaaattaattaatactatcatatccgactacactgaagctgaattaattttgaatttaaactataactaagttaagaaatttaaacaaaaagaccatcacaaaacagcacaaaatatgcaaataaaaaggtacacaatttggacaaaagtttcccaaagaaagtaaaattgtttgttttttcttccttttaatcttttgtcaataacgtaaaactattgcatattaaatagtaattttttctcgtttaatcaatttgtcaatgcagaccttaacacacatgccaaagagtttaaagtttgtatttcaatcaataataaagaacaggtttgagccaaagataaaacgaaaaatatacatacatatgtacatttacatagtaatacagatatttatgtacatacataagtcgtaagaggctgaacaagttacatagcatagcatagcatagtacccaattagcatctaacatggaaacagtcaaatgtagataaatgtgttaattatatgtacatacatgcatatgtattttaggcaatgagaacttttgtttgtagaattacgagtaaaagtaaaaaaaaaacttttgcttgtgtactttaagtctcaataaagatacgaacgaaacgagtttacgtg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]