LOCUS       XM_018882432            2160 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Bir1p (BIR1), partial mRNA.
ACCESSION   XM_018882432
VERSION     XM_018882432.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2160)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2160)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031673).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="D"
     gene            <1..>2160
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /db_xref="GeneID:30037527"
     CDS             1..2160
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="Subunit of chromosomal passenger complex (CPC); CPC
                     is comprised of Ipl1p-Sli15p-Bir1p-Nbl1p and regulates
                     chromosome segregation; required for chromosome
                     bi-orientation and for spindle assembly checkpoint
                     activation upon reduced sister kinetochore tension;
                     relative distribution to shortened microtubules increases
                     upon DNA replication stress; sumoylated in an
                     Mms21p-dependent manner; human survivin homolog;
                     GO_component: GO:0032133 - chromosome passenger complex
                     [Evidence IDA] [PMID 19158380]; GO_component: GO:0000778 -
                     condensed nuclear chromosome kinetochore [Evidence
                     IGI,IPI] [PMID 10557299]; GO_component: GO:0005737 -
                     cytoplasm [Evidence IDA] [PMID 16608876]; GO_component:
                     GO:0005874 - microtubule [Evidence IDA] [PMID 22842922];
                     GO_component: GO:0005739 - mitochondrion [Evidence IDA]
                     [PMID 14576278]; GO_component: GO:0005739 - mitochondrion
                     [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 -
                     nucleus [Evidence IDA] [PMID 16608876]; GO_component:
                     GO:0005819 - spindle [Evidence IDA] [PMID 16381814];
                     GO_component: GO:0051233 - spindle midzone [Evidence IDA]
                     [PMID 16381814]; GO_function: GO:0046872 - metal ion
                     binding [Evidence IEA]; GO_function: GO:0003674 -
                     molecular_function [Evidence ND]; GO_process: GO:0006915 -
                     apoptotic process [Evidence IMP] [PMID 16608876];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IMP] [PMID 10557299]; GO_process: GO:0000022 - mitotic
                     spindle elongation [Evidence IMP] [PMID 16381814];
                     GO_process: GO:0031134 - sister chromatid biorientation
                     [Evidence IMP] [PMID 19528231]; GO_process: GO:0071173 -
                     spindle assembly checkpoint [Evidence IMP] [PMID
                     22908045]"
                     /codon_start=1
                     /product="Bir1p"
                     /protein_id="XP_018736808.1"
                     /db_xref="GeneID:30037527"
                     /translation="

MKSKKNLYSLETRLETFSGTWLHGSKSRAKKNHVSWPHVKPTSSQMAAAGFYFNPSVDSKDNATCFICQHSLDGWESEDDPIQEHLAHASSCPWAQLCGRPWMVDEDVEPETLYDTIYNPHTEESLNARLETFAGCWPHDSKKGWIPISLNMAKAGFFYSSATVDDDVAKCAYCEMELDGWEMRDDPILEHKRRNEQCLFFTTEPPLGSEDAEPIKHAQSTRGRKVSIGTETASDKVPAAKKGQKRPSTAGSEDSEEPQTKKKKTTKKTKTPAPKTPKEGNLRLSIFEDSDEDMADEPLTTAEIPQKLRGFSTSTPRKSVPGAKDSNNSTVEDVSLHIPGGFPKGKRRLMKRKSSEPKRAFDLSFREVEVKSLQPDKLDDQPGEVLKRTKQVLVESVEEVIEPIEEPVGEPVDEPVEESAEELVDEPVEESAEEPVEEPVEESVEEPVEEPVEEPVEEPVEGPGEEPVEEPVEEPVEEPVEEPVEEPVEEPVDEPVEEPVEESIEEPVDEPVEDPVEEAVKEIKEPFEVSIEEPVEEPVKEPIEEPAEEPVEELVKEPAEEPVEEPAEETVTDPIQVDTESMHKENQYPSETAEPTPDESEAPDLSSNWTILSSSTQSEQYELPDPQTPPKQLETVPLWDPIDVDRVFSVLNEMNSTTELEYAKELPPSMLDTTVINWLSRNGENAEADLMKKCESLVEKYRSEGERALAAIMNLPTID"

     misc_feature    37..288
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="Inhibitor of Apoptosis domain; Region: BIR;
                     pfam00653"
                     /db_xref="CDD:425801"
     misc_feature    order(160..162,184..186,190..192,211..219,223..225,
                     235..237,250..252,262..267)
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     misc_feature    order(193..195,202..204,253..255,274..276)
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="Zn2+ binding site [ion binding]; other site"
                     /db_xref="CDD:237989"
     misc_feature    385..606
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="Inhibitor of Apoptosis domain; Region: BIR;
                     pfam00653"
                     /db_xref="CDD:425801"
     misc_feature    order(478..480,502..504,508..510,529..537,541..543,
                     553..555,568..570,580..585)
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     misc_feature    order(511..513,520..522,571..573,592..594)
                     /gene="BIR1"
                     /locus_tag="AWJ20_5300"
                     /note="Zn2+ binding site [ion binding]; other site"
                     /db_xref="CDD:237989"
ORIGIN      

atgaaatccaaaaagaatctgtattcattagaaacacgtctagaaacatttagtggaacatggcttcatgggtcgaaatcaagagccaagaaaaatcatgtttcatggcctcatgtaaaacccacgtcgagccaaatggcggcagcgggattttatttcaatccgagcgtagatagcaaggataatgctacttgtttcatttgccaacattcattagatggctgggaatcagaggatgacccaatacaagaacatctggcacatgcttcaagttgtccatgggctcaattatgcggtagaccttggatggttgatgaagatgttgaaccagagacattatacgacactatttataatccacatactgaagaatcgttaaatgctcgtctcgagacatttgcaggatgctggccacatgattcaaaaaaaggttggattcctatcagtttgaatatggccaaagcaggtttcttctactcgtcggccactgttgatgatgatgttgccaagtgtgcttattgtgaaatggaattggatggatgggagatgagagatgatccaatactggaacataaaagaagaaacgaacagtgtcttttttttacaactgagcctccactgggtagtgaagacgcagaaccaataaagcatgcccagagcacacgaggtcgtaaggtttctattggtactgagacagcttcggataaagtgcctgcagcaaagaaagggcagaagagaccaagtacagcaggctcagaagatagtgaagagccacaaacaaaaaagaaaaaaacgacaaagaaaaccaagaccccagctcctaagacaccaaaggaaggtaaccttcgactttcaatttttgaggatagcgacgaggatatggcagatgagccacttacgacagcagagataccccaaaagttacgaggtttttcgacttcaacacctcgcaaaagcgtaccaggtgccaaagattcgaacaattcaactgtagaggacgtctcattgcatattcctgggggattccccaaaggaaagagaaggctcatgaagagaaagagtagtgaacctaaaagggcgtttgatttgagttttagagaggtagaggtgaagtcattacaaccagataagttggatgatcagccaggagaggttttaaagagaacgaagcaggtattagtggaaagcgtcgaggaggttattgagccaatcgaagagcccgttggcgaacccgttgatgagccggttgaagagtcagccgaagagctagttgatgagccggttgaagagtcagccgaagagccagttgaagagccagttgaagagtcagtcgaagagccagtcgaggagccagtcgaagagccagtcgaggagccagtcgaagggccaggcgaagagccagtcgaagagccagtcgaggagccagtcgaagagccagtcgaggagccagtcgaagagccagtcgaggagccagtcgatgagccggttgaagagccagtagaagagtcaattgaggagccagttgatgagccagttgaagatccagttgaggaagcagtcaaggagatcaaggaaccattcgaggtgtcaatcgaggaacccgtcgaggagccagtcaaggagccaatcgaggaaccagctgaggaaccagtcgaagagctagtcaaggaaccagctgaggagccagttgaagagccagctgaggaaactgttacagaccctatccaagtggacaccgaatcaatgcataaagaaaaccaatacccatcagaaacagcagaacctacaccagatgaatcggaagctccagatctatcctctaattggacaatactaagctcttctactcagtcagaacagtacgaactaccagatcctcaaactccccctaaacaactagaaacagtgccactctgggatccaattgacgtggacagagtgttttcagtgctaaacgaaatgaattcgacaacagaacttgaatacgccaaggaacttcctccatccatgctggatacaactgtcatcaactggcttagcaggaatggtgaaaatgcagaagcagatttgatgaagaaatgcgaatcactcgttgaaaagtatcgcagcgaaggagaaagagcactcgcagcaatcatgaacttgccaactattgactaa

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