2024-05-06 02:13:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018881243 4752 bp mRNA linear PLN 07-JAN-2024 DEFINITION Sugiyamaella lignohabitans Esp1p (ESP1), partial mRNA. ACCESSION XM_018881243 VERSION XM_018881243.1 DBLINK BioProject: PRJNA342695 BioSample: SAMN04417247 KEYWORDS RefSeq. SOURCE Sugiyamaella lignohabitans ORGANISM Sugiyamaella lignohabitans Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Sugiyamaella. REFERENCE 1 (bases 1 to 4752) AUTHORS Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M., Marx,H. and Mattanovich,D. TITLE Complete genome sequence and transcriptome regulation of the pentose utilising yeast Sugiyamaella lignohabitans JOURNAL Unpublished REFERENCE 2 (bases 1 to 4752) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JAN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4752) AUTHORS Peymann,A. and Graf,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna 1190, Austria COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_031671). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4752 /organism="Sugiyamaella lignohabitans" /mol_type="mRNA" /strain="CBS 10342" /type_material="culture from holotype of Candida lignohabitans" /db_xref="taxon:796027" /chromosome="C" gene <1..>4752 /gene="ESP1" /locus_tag="AWJ20_4184" /db_xref="GeneID:30036288" CDS 1..4752 /gene="ESP1" /locus_tag="AWJ20_4184" /inference="similar to AA sequence:KEGG_Orthology:K02365" /note="Separase, a caspase-like cysteine protease; promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibits protein phosphatase 2A-Cdc55p to promote mitotic exit; inhibited by Pds1p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11149918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11149918]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 11149918]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA] [PMID 11081625]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 18321989]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP,IPI] [PMID 9635435]; GO_process: GO:0034048 - negative regulation of protein phosphatase type 2A activity [Evidence IMP,IPI] [PMID 16713564]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IGI,IPI] [PMID 12598903]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IGI,IMP] [PMID 18430955]" /codon_start=1 /product="Esp1p" /protein_id="XP_018733852.1" /db_xref="GeneID:30036288" /translation="
MSISNSASLITSTLLRCSALKIIPAIDTSFVEILSKNVERGCSQKSAELVSEYFEKAGPAIIDFYLCRKSEILKDKNAKKLYLPMIEKLILASKNISISAAGGEHIKRTKQGLQTIKHLMDLSKKNSKNSDTDGHPSIMSQLITNPTEESLNKLAISVQNSKAIEILTPSQTKALLSSTKKLLATGDIDQLVSTAAVFSGESKEYSKAAAQMLSLFSTWLNKQESISIPYTSVREFYSKLATYFRSFERYQELKYISDSLLNLSSKAKSSTESAVNYPGLLKDSLELELGIIRAQPDSQASPKLISKLERLVVSNLSSEKYDEAIDLITRVLEVLFDVNNITHNTPIAEVKHMASISQCILFMARIYTKRPDTLSSLTSANTCKEHQSIILELLLWNFVGSASPSKNDLAAIIVRSLSSDGNLRPDSRLRPYIAYFFVTGSLYSGQEFNPDSLVEQLIADDSLPETFYVKSMTYFSLSIANHSNQQKVAYICNAVQDLSQFLSLTRHPILYKTEIEAISSFLDSHMFHDQKNGLLLQFIDSLRNDLSQDMSDLSELECSYRLDIARSYLYLGFSGVVGQQLLTANKLLTQAVSSPIQYAFLLAMETEYSASIDRRDDAVSCLSRLQKHISSSPILSEPLSAGRNANESSHQFQQRIILYCRVTEAFSSVWSITGAKELAIVAMLNLTRLLPGLLKRPGYSFWSLSSMLMDVHFRIAKLYEQLGIVKEAIYHIHEAIKLAESTECFLAQSQYLTFEAELSVKMDKQEDAKSILHRCEEIFDEDKQVVPLAKKGIEFLNIIYSTAFYLQRQNMFAEERLYYDMAESVYGDLQYPDDSKSVESISRRVSELSLKTAPIRRAIGLESVRNKLIRNHAYSLEEQGLVDVATNILVTDHVIGPASPVKSPSKIRSTENVATREEILFKISQSRNCFVKAKKVLLLDPVFGVLQDSAISVPSVNTDIGGGSNRKSSLTNMPTNAQCAEAVKHLVRARSILTENLEKIKEVCTNTELVDMSNILNNVSILLSAVCTAQEKSLYSYFSHLELTKASSVLSERQIAILREQDASNYLDWPNQDRKEAAGQYKPIAVGSLDGNHFGSKIPDNWLVVSLNIAPATGNLIVSRYEKERDPFIITLPLNRHSSRDVDEVSFSYNDGLQRLRDIISRSNDSADISRTSQIHTPDAKRAWWHERFEMDKELESLLYESQFCWLGGFRGILDSEVPDKKLAEKFVKDFKQILDRYLPSRANTLRPRRGVRSAGAANKGVPQQPVDLSPRVFELFLTLGHPDTLEDPGLLEDLVYFVLDIIQFHGEQNAYDELDIDQLVVDVEEALRSYHTRYGKVTNKKNYDHVILVLDKKCQQFPWESIPLLRKRSVSRVPSLAILNKLLSARKSSSYSPPGNDVFYVLNPSKDLIRTQERFEEPFKNMSGWQGIVSRAPSEDEIVNALNEKDLFIYVGHGGGERYIRSAKIKGLKKCCPTLLFGCSSGLVQEAGEYDPYGTCMSFMASECPMLLANMWDVTDKDIDTFSRNMLERWGVLSGQRATVDNGRYNVAQAVAMTRDDCTLKFLTGAAPVIYGLPLESAISYD"
misc_feature 3331..4560 /gene="ESP1" /locus_tag="AWJ20_4184" /note="Peptidase family C50; Region: Peptidase_C50; pfam03568" /db_xref="CDD:427370" ORIGIN
atgtcaatatcgaactcagcatccttgataacatcaactctattgagatgttctgcattgaaaataatacccgcgattgatacaagctttgtcgagattctctctaaaaatgttgaaagaggatgctcacaaaaatctgctgaattggtatctgaatattttgaaaaggcaggtcctgccattattgacttttacttgtgccgtaaatcagagattttgaaagacaaaaatgcgaagaagctatacctaccaatgattgaaaaactaattctggcttctaaaaatatcagtatttcagcagccggtggggaacacatcaaaagaactaaacaaggattacaaacaatcaagcatctcatggatctctcaaagaagaactcaaagaatagtgacacagacggccatcccagtattatgagccaacttattacaaatcccactgaagagtcacttaataagctagcaatatctgttcagaattcgaaggctatcgagattttaactccatctcaaacaaaggctctattgtcatcgactaaaaaactgcttgccactggagatattgatcagctagtatctactgctgcggtattctctggtgaaagcaaagaatattcaaaggcggctgcgcaaatgttatcgctcttttcgacttggttaaacaaacaggaaagcatatccataccatatacatctgtacgtgagttttattccaagcttgcaacctactttcgatcattcgaacgctatcaagagctcaagtacatatcagatagtctgctcaatcttagctcaaaagccaaatcatcaacagaaagcgcagtcaactatccaggtttattaaaggattcactggaactggaactgggaataattcgggctcaaccggattcacaagctagtcctaagctaatttcaaaactcgaaaggttagtggtaagcaatctctcatcggagaaatacgacgaagcaatagaccttataactagggtattggaagtactatttgatgtcaataacatcacccataatactccaatagccgaagtcaaacatatggcctcaatatcacaatgcatattgttcatggcccgaatatacacaaagcgacccgatacattatcctctttaacttcggccaatacttgcaaagagcaccagtcaataattttagaacttttattgtggaactttgtgggcagcgcaagcccttcaaaaaatgatttggcggccatcatagttcgctcactttcatcagatggcaatcttcgccctgactctcggttacggccatatatcgcatatttttttgtcaccgggtcattgtactcaggccaagaattcaacccggattctcttgttgaacagctgatagcggatgactcactccccgaaacattttatgttaagagcatgacatatttctcgttatctattgcaaaccattcgaaccaacaaaaggttgcttatatctgtaacgcagttcaagacttatcgcagtttctgtcgttaacacgccatcccattttatacaaaaccgaaatagaggcaatttcttcatttttagattctcacatgtttcatgatcagaagaatggtttattattacaatttattgattccctgcggaatgatttgagccaagacatgtctgatttgtctgagctggaatgctcctatcgattggatattgccaggtcttatctatatttgggcttttctggcgtggtgggacagcaactcttgacagctaataagcttcttacccaggctgtatcatcaccaatacagtacgcatttctgcttgccatggaaacagaatattctgcatcaatagaccgtagagacgatgctgtgtcatgtctttcaagacttcaaaagcacatttcgagcagtcctattttaagtgaaccactttcggcgggtcgtaatgcgaatgaatcatcccaccagtttcagcagcgtattattctctattgtagggtaacagaggcgttctccagcgtatggtctataacgggtgctaaggaattggcaattgttgcaatgttaaatcttactcgtttattacctggccttctaaagcgaccagggtacagtttttggagtctctcaagtatgctcatggatgttcattttcgaattgccaaactctatgaacagcttggaatcgtcaaagaagcgatatatcatattcatgaagcgataaagctggcagaatccacggaatgctttctagcccaatcccaatatttgacatttgaagcagagttgtcggtaaagatggacaaacaagaggatgccaaaagcattttacatcgatgcgaggagattttcgatgaagacaaacaggtcgtacctttggctaagaaaggtattgaatttctcaatattatttattcaacagcgttttatcttcagcgccaaaatatgttcgctgaagaacgactctattatgatatggccgagtcggtgtacggagatcttcagtatccggacgatagtaagagtgtggaaagtatctcgagaagagtctctgaattaagccttaaaacagctccgatccgtagggcgattggcttggagtctgttcgcaataagcttatcagaaatcatgcatacagcctggaagaacaggggcttgttgatgttgcaaccaatattttagtaacagatcacgtcattggccccgcatcaccagtgaaatcgccatctaagattaggagcacggagaatgtggccacgagagaggagattctgtttaaaatatcgcaatcgagaaattgctttgtgaaagcaaaaaaggtccttttactagatccagtatttggcgtcctacaggactcggctatttcagttccatctgtgaacacagatataggaggtggcagcaatcggaagtcctcattgacaaacatgcctactaatgctcaatgtgcagaagcggttaaacaccttgttcgagctagatcaatcctaactgagaatttagagaaaatcaaagaggtctgtacaaatactgagctggtagatatgtcaaacatccttaacaatgtatccatattactgtctgctgtttgtactgctcaagaaaaatctctttacagctatttctcgcatcttgagttaacgaaagcctcttcagttctgagcgaaagacagattgctattttgcgagagcaggatgcttcaaactatctagattggccaaaccaggatcgtaaagaggcagccggtcagtataagccgattgctgtcggcagtctggatggcaatcacttcggaagcaaaattccagacaactggttagtagtttcgctgaatatcgctcctgctacgggcaatcttatagtctcgcggtatgagaaagaacgagacccttttataatcacactgcctctgaacaggcatagtagcagggatgtggatgaggtatccttttcatacaatgatggtttacagagactccgagatattatttctcgcagcaatgactctgcagatatttctagaacatctcagattcacaccccagatgcgaagagagcttggtggcacgagaggtttgagatggataaagagcttgaatctttattatatgaatcgcagttctgctggcttggaggatttaggggtattttggactcggaagtacctgataaaaagcttgctgagaagtttgtgaaagattttaagcaaatactagacagatacttgccatctagagccaatacactgcggccacgaaggggcgtcagatcagctggagctgcaaataaaggtgtccctcagcaacctgtggatctaagccctcgggtattcgagctcttcttgactctgggacatcctgatactttggaggatcctgggcttctagaagatttagtttattttgttctcgatattattcagttccatggagagcaaaatgcctatgatgagctcgacattgaccagctggtggtggatgtagaagaagccctacgtagttatcacacacgttatggaaaagttacgaacaagaaaaattacgaccatgtcatcctggtgctagacaaaaaatgccaacaatttccatgggagtcaattccattattgagaaagcggtctgtaagtcgagttccatcactagcaattctcaacaagctattgtctgctaggaaaagctcctcgtactcgcccccaggaaatgacgttttctatgttctcaacccatctaaagacttgattcgaactcaggaaagatttgaagaaccattcaaaaatatgtcaggttggcagggaatagttagtagagcaccatcagaggatgagattgttaatgctttgaacgagaaagacttgtttatttatgttggtcatggtgggggtgagcgttatattcggtcggctaaaataaaaggactgaaaaagtgctgtcctacattactctttggctgtagttcgggactagtccaggaagcaggtgaatatgatccttacgggacttgcatgagctttatggcttccgaatgtcctatgctattagccaacatgtgggacgtaaccgacaaggatatcgatactttcagtcgaaacatgctagaaagatggggtgttttgagtggccagcgggcaacagttgacaatgggagatacaacgtggcccaggctgtggccatgacgagagacgattgtacattaaaatttctaactggcgcagcgcctgtcatatacggactccctttggagtctgctattagttatgactaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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