LOCUS       XM_018881088            1827 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Ubx7p (UBX7), partial mRNA.
ACCESSION   XM_018881088
VERSION     XM_018881088.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1827)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1827)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031671).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="C"
     gene            <1..>1827
                     /gene="UBX7"
                     /locus_tag="AWJ20_4039"
                     /db_xref="GeneID:30036127"
     CDS             1..1827
                     /gene="UBX7"
                     /locus_tag="AWJ20_4039"
                     /note="UBX (ubiquitin regulatory X) domain-containing
                     protein; interacts with Cdc48p; UBX7 has a paralog, UBX6,
                     that arose from the whole genome duplication;
                     GO_component: GO:0005783 - endoplasmic reticulum [Evidence
                     IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum
                     [Evidence IDA] [PMID 14562095]; GO_component: GO:0005635 -
                     nuclear envelope [Evidence IDA] [PMID 14755638];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     ND]; GO_process: GO:0030435 - sporulation resulting in
                     formation of a cellular spore [Evidence IMP] [PMID
                     14755638]; GO_process: GO:0006511 - ubiquitin-dependent
                     protein catabolic process [Evidence IMP] [PMID 14755638]"
                     /codon_start=1
                     /product="Ubx7p"
                     /protein_id="XP_018733713.1"
                     /db_xref="GeneID:30036127"
                     /translation="

MSNSSSSLFRVSFRRFAMGGQAREPASGEFYPKRAREPGAESYIQTKFVPLEVVAGSQQYVFFSQVFPVAKIPSIFIINQSVVVDRFDSEVDAQEFLDRLAQADQGLVRGVRDVSGNTSGAGNDTGSTANVQNQSSLDSSNGSSLDQNAIAAAAAAAVAALTGRSGSASGLPAGSSASVPSVSSVTPSAGSDSSNSTGAGNSTADDSAVTRGSDAATDRSASTSHNNTISTSGSGSTTTSTNSASNSGANDVSSSSPEPTNPPVPRKEKSSTPTNSVAASASTNTSNTHSSSTSSSSGLSDTQRYQIQLRKQRQADAEERKRILRLLETDREERRAQRLHHQQEQQDVPLAAESTTIPQKKKQTRSLSLSQSNQCALVIRLFDGQALKNIFNNSDTLDIVRKWVDENRTDSEDPYQFYQTFPKRSFGPGEENSTLLELDLCPSSTLILKPAENVLNAYSSSYSPSAWLQGGTRTISDAIYTFLGIGYKPPPPAPSEPSDEPSRSASPVPNPRRSGYSTPLPTPRPSDNTNPSSPSPPKSENPAPATLLSANSFSQPRDDVHPSKPNSISSSRSSSAVNVRTLHDNDDAKDDRLTYNGNQLNLEDDNNS"

     misc_feature    <907..1059
                     /gene="UBX7"
                     /locus_tag="AWJ20_4039"
                     /note="UDM1 (ubiquitin-dependent DSB recruitment module 1)
                     found in RING finger proteins RNF168, RNF169 and similar
                     proteins; Region: UDM1_RNF168_RNF169-like; cd22249"
                     /db_xref="CDD:409016"
     misc_feature    1114..1350
                     /gene="UBX7"
                     /locus_tag="AWJ20_4039"
                     /note="UBX domain; Region: UBX; pfam00789"
                     /db_xref="CDD:395637"
ORIGIN      

atgtctaactccagttccagtctcttccgagtctctttcagacgatttgctatgggcggacaggctcgtgaaccagcctcaggtgagttttaccccaaaagggcccgggagcccggggctgagtcgtatatccagaccaagtttgtcccgttagaagtggtcgccgggtcgcagcagtatgtgtttttcagccaggtgttccccgtagctaagattccaagcatatttattataaatcagtcggtggttgtcgaccgtttcgacagtgaggtcgatgctcaggagtttctagaccgcctggctcaggcagatcagggcctggttaggggcgtcagagacgtcagtggtaataccagtggtgctggaaacgacactggttcgaccgcaaatgttcagaatcagtctagtttggatagctcgaatggttcttctctcgatcagaacgcaattgctgctgccgctgccgctgctgttgctgctctgacaggcaggtcggggtctgcaagtggacttccagctggttcttctgcttcagttccttctgtctcttcagtcacaccttctgctggttctgattcgtcgaattccactggagctggcaattcaactgctgatgattcagctgtaactcgtggttcagatgctgctaccgatcgtagcgcatcgacatcacacaataatacaatatccacatcgggttctggttccacaacaacatcaacaaatagtgcatcgaattctggggctaatgatgtatccagttcgagcccggaacccactaatccacccgtacctcgtaaagagaaatcgtccactccaacgaactctgttgctgcttctgcttctactaacacttccaacacccactccagctcgacctcgtcgtcttctggcttatctgatacacaacgataccagatacaattgcgaaagcaaagacaggcggatgctgaggaaagaaaacgcatacttcgtctactggaaacagaccgtgaagaaagacgtgctcaacgattacaccaccaacaagagcaacaagatgttccgttggctgctgaatcgaccacaatccctcaaaaaaagaaacaaactcgctcactgtcactttctcagtctaatcaatgtgcacttgtcatccgactgtttgatggccaggccctaaaaaatatcttcaacaactccgatactttagatatcgttcgcaaatgggttgatgagaacagaacggactcggaagacccttatcaattctaccagacgtttccaaaacgctcctttggtcctggagaagaaaactctaccctactagaactagatctatgtccttcgtctaccctgatcctcaaacccgctgaaaacgtccttaatgcatactcatcctcatattcaccgtcggcatggctgcaaggaggaacccgcaccatttctgacgccatttatacctttcttggtataggatacaaaccccctccacccgctccatcggagccgtctgacgagccttcacggtcggccagtcctgttcctaatccacgaagaagtggttatagcactcctctgcccactccacggccatctgacaacactaatccgtcgtctccatcgccaccaaaatcagagaacccggccccggccaccctcttgtcggcaaactcgttttcccaacctcgagacgacgtccacccgagcaagcccaacagcatcagcagcagtcggtcctcctccgccgtcaacgtccgcaccctccacgacaacgacgacgccaaagacgaccgtctgacctacaacggcaaccaactcaacctcgaggacgacaataatagctag

//