LOCUS       XM_018881042            2190 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Sly41p (SLY41), partial mRNA.
ACCESSION   XM_018881042
VERSION     XM_018881042.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2190)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2190)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031671).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="C"
     gene            <1..>2190
                     /gene="SLY41"
                     /locus_tag="AWJ20_3998"
                     /db_xref="GeneID:30036080"
     CDS             1..2190
                     /gene="SLY41"
                     /locus_tag="AWJ20_3998"
                     /inference="similar to AA sequence:KEGG_Orthology:K15283"
                     /note="Protein involved in ER-to-Golgi transport;
                     GO_component: GO:0005783 - endoplasmic reticulum [Evidence
                     IDA] [PMID 14562095]; GO_component: GO:0005783 -
                     endoplasmic reticulum [Evidence IDA] [PMID 23613772];
                     GO_component: GO:0016021 - integral component of membrane
                     [Evidence IEA,IEA]; GO_component: GO:0016021 - integral
                     component of membrane [Evidence ISM] [PMID 12192589];
                     GO_component: GO:0016020 - membrane [Evidence IEA,IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     ND]; GO_function: GO:0005215 - transporter activity
                     [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi
                     vesicle-mediated transport [Evidence IGI] [PMID 1903839];
                     GO_process: GO:0006810 - transport [Evidence IEA,IEA]"
                     /codon_start=1
                     /product="Sly41p"
                     /protein_id="XP_018733673.1"
                     /db_xref="GeneID:30036080"
                     /translation="

MSTLSILHVQDFNKTISVDSSQYGETVSRTQTPLQAKWDIVPIRDCNSSVLLSPRAENLPSPSRHNYPPRRTRSQTELVPASSGLAKSVSSPGTSISSPSTPANIGIPQAGYVAIFNLPDPSLTVMAGGGARSATATTSGTGPISGTASQLSSSATFSLRGGGMDPGSSGTRARTNSGPPRPAIIKTTFVDQNNSSNGSDDTSSSPLTLNSASSGTSIGTGFHNVEAVTGSVHGVSGKNPHVRHRDSLSLNGSSAQNFGVMPVTSGTKTATGSAASAGGAYEPGSLTGPVNGSVFSSDSSEETLVAALSPVGAPPGGLSSSFIPNHNNQHLHHIHNQRATSGLLPLAGGNAARRHRSKSFSETVSETSQEAIRQLAPPISLPLVLTCIAWYSTSAMSNTLNKSILTAFPYPVSLSMVQFTLAASFGISTMKLAQISPDIALALPKGIISPGRVGFRPPTKAILMATAPMGMFQLSGHILSHMSTSLIPVSLVHTIKALSPLFTVAAYRLLFGVSYKRSTYLSLIPLTLGVIMTCSVEFSSHFMGLVYALIAALIFVSQNMFSKKLLTSGNTGGDESTKLDKLNVLCYCSSLAFIFTFPLWFFTEGIGLLGDYSRSSGNFFGASSNGVDAGSIMSTSGLMLAFLINGFVHFAQNLLAFQVLGMVSPVTYSVASLIKRIVVITVAIIWFGQRVTGTQGWGILLTFLGLYLYDRCGGDKTKNYEPKSSVLPK"

     misc_feature    157..>948
                     /gene="SLY41"
                     /locus_tag="AWJ20_3998"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    1168..2154
                     /gene="SLY41"
                     /locus_tag="AWJ20_3998"
                     /note="Triose-phosphate Transporter family; Region: TPT;
                     cl26744"
                     /db_xref="CDD:452667"
ORIGIN      

atgtcgactctctcaatactgcacgtgcaggacttcaataagacaatttccgtcgattcatcccaatatggagagacagtatcaagaactcaaaccccgttacaggcaaaatgggatattgtaccaatccgagattgtaattcttcggtgttattatcgcctagagcggaaaatctcccttctccttcgcgtcataattacccccctcggagaaccagatctcaaactgagcttgtaccagcttcatccggtttagccaagtctgtttcttctcctggaacttcgatttcgtctccttctactccagctaatataggtataccccaagctggatacgttgctatttttaacctacctgatccgtcattgactgtaatggctggtggtggtgcacggtcagcaacagccactaccagtggtactggacctatttccggcactgcttcacaattatcctcatctgctacattttctcttcgaggaggtggaatggatccaggatcaagtggtactcgtgctcgaaccaatagtggtccgcctcgtcctgctattatcaaaacaacctttgttgatcagaacaatagttctaatggatctgacgacacttccagttcacctttaactttaaatagtgctagtagtggcacaagtataggtactggctttcataatgttgaggctgtgacggggtctgttcatggagtcagtggaaagaatccccatgttagacatagagacagcctaagccttaatggatcctcggcgcaaaattttggtgtcatgcccgtaacttctggaactaaaactgccacgggctctgctgctagtgcaggtggagcatatgagccgggctctttgaccggtcctgttaacggatccgtcttctccagcgattcgtctgaagagacactagtggcagctctaagtccagtgggtgcaccccctggcggtctatcttcatcatttatcccaaatcacaataatcagcatcttcatcatattcacaatcagagagcaacttctggtttactaccattagctggcgggaatgccgcgcgacgtcatagatctaaatctttctcagaaacagttagtgagactagccaagaagcgataaggcaactggctcctcccattagtttaccacttgttttaacctgtattgcatggtatagcacatcggccatgtctaacacattgaacaagtcgattctcactgcgtttccatacccagtaagtttgtcaatggttcagttcaccctggctgcatcctttggaatatctactatgaagcttgctcaaatatctccagatattgctctagctctacctaagggaatcatctctccaggaagagtgggattccgaccacctactaaggcgattcttatggctacagcaccaatgggaatgttccagctttcaggccatatattatctcatatgtccacctcattaatccctgtgtcactagtgcatacaatcaaagcattatctcctctgttcacggtagctgcataccgattgttatttggcgtttcgtataaacgatccacctacctttcacttatccccttgacactgggtgtcattatgacctgttcagtcgaattcagttcgcatttcatgggactggtatatgcattaatagcagccttgatttttgtctcccaaaatatgttttccaaaaagctactaacatctggcaacactggaggggacgagtcaactaagcttgacaaactcaatgttctttgctattgttcttctctagcatttatatttacgtttccattgtggttttttactgagggaattggcctgttaggtgactactcgcgatcgagtggtaacttttttggcgcttcctctaatggtgtagatgcaggtagtatcatgtccacctcgggcctgatgcttgcgttcctcataaatggatttgtacacttcgctcagaacttgttagcattccaggttctgggtatggttagcccggtgacatattcggtggctagtttgataaagcgcattgtcgtaatcaccgttgccataatctggttcggccaaagggtcactggtacacagggctggggaatacttttgactttcctggggctgtacctctatgaccgttgcggtggcgataagaccaaaaactatgagccaaaatcatcggttctgcctaaatag

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