LOCUS       XM_018880985             903 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Emc2p (EMC2), partial mRNA.
ACCESSION   XM_018880985
VERSION     XM_018880985.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 903)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031671).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="C"
     gene            <1..>903
                     /gene="EMC2"
                     /locus_tag="AWJ20_3944"
                     /db_xref="GeneID:30036021"
     CDS             1..903
                     /gene="EMC2"
                     /locus_tag="AWJ20_3944"
                     /note="Member of conserved ER transmembrane complex;
                     required for efficient folding of proteins in the ER; null
                     mutant displays induction of the unfolded protein
                     response; homologous to worm Y57G7A.10/EMC-2, fly CG17556,
                     human TTC35; GO_component: GO:0072546 - ER membrane
                     protein complex [Evidence IDA] [PMID 19325107];
                     GO_component: GO:0005783 - endoplasmic reticulum [Evidence
                     IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum
                     [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 -
                     molecular_function [Evidence ND]; GO_process: GO:0034975 -
                     protein folding in endoplasmic reticulum [Evidence IGI]
                     [PMID 19325107]"
                     /codon_start=1
                     /product="Emc2p"
                     /protein_id="XP_018733621.1"
                     /db_xref="GeneID:30036021"
                     /translation="

MSSETKEKLLTSMANASYYNASPRDLESLHAESRQYLSKAQHLIPEEQLLGLLEQHFYLALLTCKDSEAKLVLQRLTDRITEDPSRVAILKAQYIEATDGPEAAQKFLSARPTGDLRAFKRKTVILKQKGDIKTYIKELLRYVEEVAPNDSEAWAELAEAYVSIGQYPQAIHALEEVLISAPQASNIFARLGEVFLIEATTSSPNKVTSDQLTLLIHSAQHFLRSVELSPDYIRGWCGALIASSKILAWPKLAAEESTKYTKISKIAKKQTQRLIKTAKEAAISDEDIAAAKIIIAQYEN"

     misc_feature    order(349..351,358..363,370..375,379..381,454..456,
                     463..468,475..480,484..489,556..558,565..570,577..582)
                     /gene="EMC2"
                     /locus_tag="AWJ20_3944"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    349..435
                     /gene="EMC2"
                     /locus_tag="AWJ20_3944"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    409..567
                     /gene="EMC2"
                     /locus_tag="AWJ20_3944"
                     /note="Tetratricopeptide repeat; Region: TPR_19;
                     pfam14559"
                     /db_xref="CDD:434038"
     misc_feature    448..540
                     /gene="EMC2"
                     /locus_tag="AWJ20_3944"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
ORIGIN      

atgtcttctgaaacaaaggaaaagctgcttacctctatggcgaatgccagttactataatgcgtctccacgagacctggaaagcttacacgcagagtccagacaatatctttccaaagcacaacatctcattccagaagaacaattgctgggattacttgagcagcacttttatttggccttgttgacctgtaaagactctgaagctaagctcgtcttacagaggctgacagatcggataaccgaagatccaagccgggttgccattctaaaggcacaatacattgaggctactgacgggccagaggcagctcaaaagtttttatcggcacgaccaactggtgatttgagagccttcaaacgaaaaaccgttatcttaaaacaaaagggtgatattaaaacgtatatcaaggagcttcttcgttatgttgaggaggtcgctcccaacgattcagaagcatgggctgaattagccgaggcatatgtttcaattggccagtatcctcaagctattcatgctctcgaggaggtgctcatcagcgctcctcaagcatcgaacatttttgccagattgggcgaggtatttctcattgaagctaccactagctcgcctaacaaggtgaccagtgatcaactcactcttctgatccattccgcccagcatttcctacgctcggttgaactttctccagactacattcgtggctggtgtggagcattaatagcctcgtctaaaatactagcgtggcccaagttggcggctgaagagtctacaaaatacaccaaaatcagtaagattgctaagaagcagactcagcgactcattaagactgccaaagaagctgctatctctgacgaagatattgcagccgcaaaaattatcatagcccagtatgagaattaa

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