GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-04 14:16:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_018878423            1485 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Kre5p (KRE5), partial mRNA.
ACCESSION   XM_018878423
VERSION     XM_018878423.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 1485)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1485)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1485)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031672).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1485
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="A"
     gene            <1..>1485
                     /gene="KRE5"
                     /locus_tag="AWJ20_1533"
                     /db_xref="GeneID:30033346"
     CDS             1..1485
                     /gene="KRE5"
                     /locus_tag="AWJ20_1533"
                     /inference="similar to AA sequence:KEGG_Orthology:K11718"
                     /note="Protein required for beta-1,6 glucan biosynthesis;
                     mutations result in aberrant morphology and severe growth
                     defects; GO_component: GO:0005783 - endoplasmic reticulum
                     [Evidence IEA]; GO_component: GO:0005783 - endoplasmic
                     reticulum [Evidence TAS] [PMID 10601196]; GO_component:
                     GO:0005788 - endoplasmic reticulum lumen [Evidence IEA];
                     GO_function: GO:0003980 - UDP-glucose:glycoprotein
                     glucosyltransferase activity [Evidence IEA]; GO_function:
                     GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase
                     activity [Evidence IDA] [PMID 9611196]; GO_process:
                     GO:0006078 - (1->6)-beta-D-glucan biosynthetic process
                     [Evidence TAS] [PMID 8550469]; GO_process: GO:0097359 -
                     UDP-glucosylation [Evidence IEA]; GO_process: GO:0006486 -
                     protein glycosylation [Evidence IEA]"
                     /codon_start=1
                     /product="Kre5p"
                     /protein_id="XP_018735728.1"
                     /db_xref="GeneID:30033346"
                     /translation="
MNTPNAWIVTPSICEYDLDNIILSTASEDGVLKGTYQLSNILLEGHATDTTLDVPPRGLAVDLGTREEPKIVDTIVMANFGYLQLKANPGLWILSPKSGRSSKIFELVSIGLSSVSLSHESNKIWLTSMTGATIFPKFRRYPGMEDEDVLDTSEVSTIASKIGSGLAKVWSKFDRKTTNIVSVDDKSQAEINIFAVASGHLYERLLSIMTVSVMRHTNHTVKFWLIENFLSPSFKEFLPTLSSKYGFEYELITYKWPHWLRGQKEKQRTIWGYKILFLDTLFPQTLDKVIFVDSDQIIRTDLKELVDMDLQGAPYGYTPMGDSREEMEGFRFWKQGYWKKYLNGLPYHISALYVVDLKRFREIAAGDRLRKQYQMLSADPESLANLDQDLPNHMQRQIPIFSLPQDWLWCETWCSDESLATAKTIDLCNNPLTKEPKLDRARRQIPEWTVYDNEIADLESEFKQIKHQSNLEDKILDPVSSVQAEVDSIGHDDL"
     misc_feature    130..453
                     /gene="KRE5"
                     /locus_tag="AWJ20_1533"
                     /note="UDP-glucose:Glycoprotein Glucosyltransferase;
                     Region: UDP-g_GGTase; pfam06427"
                     /db_xref="CDD:428937"
     misc_feature    571..1374
                     /gene="KRE5"
                     /locus_tag="AWJ20_1533"
                     /note="Glucosyltransferase 24; Region: Glyco_transf_24;
                     pfam18404"
                     /db_xref="CDD:436473"
ORIGIN      
atgaacacacctaacgcctggattgtgactccttcgatttgtgaatatgatttggataacattattttaagcactgcatcagaagatggcgtcttgaaaggaacttatcaattgtccaacatcttacttgagggacatgcgactgacacgacgttagacgtcccgcctcgtggccttgcagtagacctgggtacacgtgaagaaccaaagatcgtggatacaatcgtgatggccaatttcgggtatttgcaacttaaagcgaaccctggtttatggattcttagcccaaagagcggaaggagttccaaaatttttgagctcgtttcgataggattaagctcagtttcattgagccatgaatcaaacaaaatatggctcacttctatgacaggagcaactattttccccaaattcagaaggtatcctggcatggaggatgaggatgttcttgatacatctgaagtttcaactatcgcctctaagattggctctggactggcaaaagtttggtccaagtttgatcgtaaaactacaaacattgtatcagtcgacgataagtctcaagcggaaatcaacatctttgctgtggctagtggacacctatatgagagattactaagcattatgacagtaagtgtaatgaggcacacaaatcacacagtcaagttttggttgattgagaactttttgtcccctagtttcaaagagtttttacccactctatcatccaagtatggatttgaatatgagcttataacgtacaaatggccacattggctacgaggacaaaaggagaagcaaagaactatctggggctataaaatcctgtttttagatacactgttcccacaaactttagataaggtcatctttgtcgactctgaccaaatcatcagaaccgatcttaaggaattggtagatatggatttgcaaggggcaccttacggatatactccaatgggtgactccagagaagagatggaagggttcagattctggaaacaaggttattggaaaaagtatcttaatgggctgccatatcatatcagtgcgctgtatgttgtggatctcaaaagattcagagaaattgcagccggagatagactaagaaagcaataccagatgctttcagctgacccagaatcgttggccaaccttgatcaagatctgccgaaccacatgcaacggcagatccctatcttttctctacctcaagattggctgtggtgtgagacttggtgctctgacgaaagcttggccactgcaaagacaattgatctttgtaacaatccacttacaaaagagccgaagctcgatcgcgcaagacgccaaattccagaatggactgtgtatgacaatgaaatcgctgatttagagagcgagttcaagcaaattaaacaccagtctaacctggaagacaagatattagaccctgtaagctcggttcaggctgaagttgacagcattggtcacgatgacttgtaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]