2024-05-04 14:16:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018878423 1485 bp mRNA linear PLN 07-JAN-2024 DEFINITION Sugiyamaella lignohabitans Kre5p (KRE5), partial mRNA. ACCESSION XM_018878423 VERSION XM_018878423.1 DBLINK BioProject: PRJNA342695 BioSample: SAMN04417247 KEYWORDS RefSeq. SOURCE Sugiyamaella lignohabitans ORGANISM Sugiyamaella lignohabitans Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Sugiyamaella. REFERENCE 1 (bases 1 to 1485) AUTHORS Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M., Marx,H. and Mattanovich,D. TITLE Complete genome sequence and transcriptome regulation of the pentose utilising yeast Sugiyamaella lignohabitans JOURNAL Unpublished REFERENCE 2 (bases 1 to 1485) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JAN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1485) AUTHORS Peymann,A. and Graf,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna 1190, Austria COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_031672). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1485 /organism="Sugiyamaella lignohabitans" /mol_type="mRNA" /strain="CBS 10342" /type_material="culture from holotype of Candida lignohabitans" /db_xref="taxon:796027" /chromosome="A" gene <1..>1485 /gene="KRE5" /locus_tag="AWJ20_1533" /db_xref="GeneID:30033346" CDS 1..1485 /gene="KRE5" /locus_tag="AWJ20_1533" /inference="similar to AA sequence:KEGG_Orthology:K11718" /note="Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence TAS] [PMID 10601196]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IEA]; GO_function: GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IDA] [PMID 9611196]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence TAS] [PMID 8550469]; GO_process: GO:0097359 - UDP-glucosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]" /codon_start=1 /product="Kre5p" /protein_id="XP_018735728.1" /db_xref="GeneID:30033346" /translation="
MNTPNAWIVTPSICEYDLDNIILSTASEDGVLKGTYQLSNILLEGHATDTTLDVPPRGLAVDLGTREEPKIVDTIVMANFGYLQLKANPGLWILSPKSGRSSKIFELVSIGLSSVSLSHESNKIWLTSMTGATIFPKFRRYPGMEDEDVLDTSEVSTIASKIGSGLAKVWSKFDRKTTNIVSVDDKSQAEINIFAVASGHLYERLLSIMTVSVMRHTNHTVKFWLIENFLSPSFKEFLPTLSSKYGFEYELITYKWPHWLRGQKEKQRTIWGYKILFLDTLFPQTLDKVIFVDSDQIIRTDLKELVDMDLQGAPYGYTPMGDSREEMEGFRFWKQGYWKKYLNGLPYHISALYVVDLKRFREIAAGDRLRKQYQMLSADPESLANLDQDLPNHMQRQIPIFSLPQDWLWCETWCSDESLATAKTIDLCNNPLTKEPKLDRARRQIPEWTVYDNEIADLESEFKQIKHQSNLEDKILDPVSSVQAEVDSIGHDDL"
misc_feature 130..453 /gene="KRE5" /locus_tag="AWJ20_1533" /note="UDP-glucose:Glycoprotein Glucosyltransferase; Region: UDP-g_GGTase; pfam06427" /db_xref="CDD:428937" misc_feature 571..1374 /gene="KRE5" /locus_tag="AWJ20_1533" /note="Glucosyltransferase 24; Region: Glyco_transf_24; pfam18404" /db_xref="CDD:436473" ORIGIN
atgaacacacctaacgcctggattgtgactccttcgatttgtgaatatgatttggataacattattttaagcactgcatcagaagatggcgtcttgaaaggaacttatcaattgtccaacatcttacttgagggacatgcgactgacacgacgttagacgtcccgcctcgtggccttgcagtagacctgggtacacgtgaagaaccaaagatcgtggatacaatcgtgatggccaatttcgggtatttgcaacttaaagcgaaccctggtttatggattcttagcccaaagagcggaaggagttccaaaatttttgagctcgtttcgataggattaagctcagtttcattgagccatgaatcaaacaaaatatggctcacttctatgacaggagcaactattttccccaaattcagaaggtatcctggcatggaggatgaggatgttcttgatacatctgaagtttcaactatcgcctctaagattggctctggactggcaaaagtttggtccaagtttgatcgtaaaactacaaacattgtatcagtcgacgataagtctcaagcggaaatcaacatctttgctgtggctagtggacacctatatgagagattactaagcattatgacagtaagtgtaatgaggcacacaaatcacacagtcaagttttggttgattgagaactttttgtcccctagtttcaaagagtttttacccactctatcatccaagtatggatttgaatatgagcttataacgtacaaatggccacattggctacgaggacaaaaggagaagcaaagaactatctggggctataaaatcctgtttttagatacactgttcccacaaactttagataaggtcatctttgtcgactctgaccaaatcatcagaaccgatcttaaggaattggtagatatggatttgcaaggggcaccttacggatatactccaatgggtgactccagagaagagatggaagggttcagattctggaaacaaggttattggaaaaagtatcttaatgggctgccatatcatatcagtgcgctgtatgttgtggatctcaaaagattcagagaaattgcagccggagatagactaagaaagcaataccagatgctttcagctgacccagaatcgttggccaaccttgatcaagatctgccgaaccacatgcaacggcagatccctatcttttctctacctcaagattggctgtggtgtgagacttggtgctctgacgaaagcttggccactgcaaagacaattgatctttgtaacaatccacttacaaaagagccgaagctcgatcgcgcaagacgccaaattccagaatggactgtgtatgacaatgaaatcgctgatttagagagcgagttcaagcaaattaaacaccagtctaacctggaagacaagatattagaccctgtaagctcggttcaggctgaagttgacagcattggtcacgatgacttgtaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]