GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-04 07:25:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_018878300            2082 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans bifunctional
            glycerol-3-phosphate/glycerone-phosphate O-acyltransferase SCT1
            (SCT1), partial mRNA.
ACCESSION   XM_018878300
VERSION     XM_018878300.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2082)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2082)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031672).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="A"
     gene            <1..>2082
                     /gene="SCT1"
                     /locus_tag="AWJ20_1421"
                     /db_xref="GeneID:30033222"
     CDS             1..2082
                     /gene="SCT1"
                     /locus_tag="AWJ20_1421"
                     /inference="similar to AA sequence:KEGG_Orthology:K13507"
                     /note="Glycerol 3-phosphate/dihydroxyacetone phosphate
                     sn-1 acyltransferase; dual substrate-specific
                     acyltransferase of the glycerolipid biosynthesis pathway;
                     prefers 16-carbon fatty acids; similar to Gpt2p; gene is
                     constitutively transcribed; GO_component: GO:0005783 -
                     endoplasmic reticulum [Evidence IEA]; GO_component:
                     GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID
                     14562095]; GO_component: GO:0005783 - endoplasmic
                     reticulum [Evidence IDA] [PMID 19525420]; GO_component:
                     GO:0005789 - endoplasmic reticulum membrane [Evidence
                     IEA]; GO_component: GO:0016021 - integral component of
                     membrane [Evidence IEA]; GO_component: GO:0016021 -
                     integral component of membrane [Evidence ISM] [PMID
                     12192589]; GO_component: GO:0016020 - membrane [Evidence
                     IEA]; GO_function: GO:0004366 - glycerol-3-phosphate
                     O-acyltransferase activity [Evidence IEA]; GO_function:
                     GO:0004366 - glycerol-3-phosphate O-acyltransferase
                     activity [Evidence IDA,IGI,IMP] [PMID 11544256];
                     GO_function: GO:0016287 - glycerone-phosphate
                     O-acyltransferase activity [Evidence IEA]; GO_function:
                     GO:0016287 - glycerone-phosphate O-acyltransferase
                     activity [Evidence IDA] [PMID 11544256]; GO_function:
                     GO:0016740 - transferase activity [Evidence IEA];
                     GO_function: GO:0016746 - transferase activity,
                     transferring acyl groups [Evidence IEA,IEA]; GO_process:
                     GO:0016024 - CDP-diacylglycerol biosynthetic process
                     [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic
                     process [Evidence IEA]; GO_process: GO:0008152 - metabolic
                     process [Evidence IEA]; GO_process: GO:0008654 -
                     phospholipid biosynthetic process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IGI,IMP] [PMID 11544256]"
                     /codon_start=1
                     /product="bifunctional
                     glycerol-3-phosphate/glycerone-phosphate O-acyltransferase
                     SCT1"
                     /protein_id="XP_018735617.1"
                     /db_xref="GeneID:30033222"
                     /translation="
MTDKNEKAKTNSTPNPPPNWLYDLMLWIFTIIFDLFFRKILPRGAYRIPKKGAVIFVAAPHANQFVDPMMLMQQVKVSSGRRISFLVAEASTKRPFIGFMAWATNAIGVVRAQDNLVKGSGTIYMEESDPLKVLGKGTKFTQECEEAGHVGLPHGLGMNDIDKIISDTELTVRKEFKPKARDLLLKGTTYKVASRVNHSDMYHKVFRHLHDGNCLGIFPEGGSHDRPDLLPIKAGVAIMALGAIADNRDCNVKIVPCGMNYFHPHKFRSRAVIEFGEPVSVPAELVDMYLAGGDDKRKAVKSLLDDITVALKSVTITSPDYDTLMILQAARRLYLPKGKQVPLSLVVELTRRFTEGYNHYKDDPRIIHMREMVSAYNRQLSDLGIKDHQVETASLSPPTVIGKLIFRTGKLLVLLIFSLPGAILFAPVFVATKRISKKKAAEALKASSVKIAARDVLATWKLLVAMGLTPVLYTFYAFLATWLSYKYELVDRNWRSLVFVTIASYIVLPSVTFAALVIGETGMDIFKSLRPLALALNPSHKNTVAKLKQTKAQLSEEITELVNTLGPELYPDFEHDRIKQPLFRSDDRRASRRDRASSNASDWSMASSGDESAAISRVNSEFDLADIPLFSYGSSSGRTTPGSHSRTVSDTSSVEDLNDSVERATGSEAFNTEISKRIRGAMAERLSRGEHEN"
     misc_feature    73..924
                     /gene="SCT1"
                     /locus_tag="AWJ20_1421"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: Unknown AAK14816-like;
                     Region: LPLAT_AAK14816-like; cd07992"
                     /db_xref="CDD:153254"
     misc_feature    order(181..183,190..192,199..201,259..270,661..669)
                     /gene="SCT1"
                     /locus_tag="AWJ20_1421"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153254"
ORIGIN      
atgactgacaaaaatgaaaaggccaagacaaattcgacgccaaacccaccccccaactggttgtatgacttgatgctctggatcttcacaatcatctttgatctttttttccgaaagattcttcctcgtggagcttatcgaattcccaaaaagggtgctgtgatttttgtggctgctcctcatgcgaaccagtttgttgatcccatgatgctgatgcaacaagtaaaagtatcgtctggtagacgcatttcctttctcgttgctgaggctagtaccaagcgaccatttataggattcatggcatgggccaccaatgcaattggcgttgttcgagcccaagataaccttgtcaaaggatctggtactatttacatggaggagagtgatcctttgaaagttcttggcaaaggcacaaagttcactcaagaatgtgaagaagctggccatgttggacttccacatggacttggtatgaacgatattgataaaatcatttctgacactgaattgactgttcgcaaggagtttaagccaaaggcacgtgatcttcttcttaaaggcacaacttataaggtagccagtagagtcaaccattctgacatgtatcataaggtatttcgccatcttcacgatggaaactgcttgggaatcttccctgaaggtggctctcatgacagacctgatttgttaccaatcaaggcaggtgttgctatcatggcactgggtgctatagcggataatagagattgtaatgtgaaaatcgttccttgcggaatgaactactttcatcctcataaatttagatctcgggcagttattgaatttggtgaacctgtgagtgtgcctgctgaactggtagacatgtatttagctggtggcgacgataaaagaaaggctgttaagagtttgttggatgatattacggttgctctaaagagtgttacaattacatctcctgattatgatacactgatgattctccaagctgctcgtaggttgtacttgcccaagggtaaacaggtgcctttatcacttgttgtggagcttactagaaggtttactgaaggttataatcactacaaagatgatccaagaattattcatatgagggaaatggtttctgcctataatagacaattgagtgatcttggaattaaggatcaccaagtcgaaactgcctctttgagcccaccgactgttattggcaagttaatatttcgtactggtaaacttctcgttctcttaattttcagtttgcctggtgctatcttgtttgccccagtcttcgttgcaacaaaacgaatttcaaagaaaaaagctgctgaagctctaaaagcaagtagtgttaagattgctgctagagatgtgttggctacatggaagctacttgtggccatggggctaactcctgtattgtacaccttttatgcatttctagccacttggttatcatacaaatacgagcttgttgatagaaattggagatctcttgtttttgtcactattgcttcgtatattgtactaccgtccgtgacgtttgcagccttagtaattggtgaaactggtatggacatattcaagtctttacgaccattggcattggcacttaatcctagtcataaaaacactgttgccaaacttaaacagactaaagctcagttgagtgaagaaattacagagttagtcaatactttaggaccagagttgtatcccgatttcgagcatgatagaatcaagcaacctttgttccggtcagatgatcgtagagcatctagacgtgaccgtgccagttcaaatgcatccgactggtccatggcatcatctggcgatgagtcggcagctatctcaagagttaattcagaattcgacttggccgatattccactattcagctatggatcatcttctggacgaacaaccccaggtagtcatagtagaactgtatcagacacttcatctgttgaggacttgaacgactctgttgaaagagctactggaagtgaagcatttaacactgaaataagtaaaagaatacgcggtgccatggcagaacgactaagtcgaggtgagcacgaaaactaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]