LOCUS       XM_018877915             609 bp    mRNA    linear   PLN 07-JAN-2024
DEFINITION  Sugiyamaella lignohabitans Lot6p (LOT6), partial mRNA.
ACCESSION   XM_018877915
VERSION     XM_018877915.1
DBLINK      BioProject: PRJNA342695
            BioSample: SAMN04417247
KEYWORDS    RefSeq.
SOURCE      Sugiyamaella lignohabitans
  ORGANISM  Sugiyamaella lignohabitans
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Trichomonascaceae;
            Sugiyamaella.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Bellasio,M., Peymann,A., Valli,M., Sipitzky,M., Graf,A., Sauer,M.,
            Marx,H. and Mattanovich,D.
  TITLE     Complete genome sequence and transcriptome regulation of the
            pentose utilising yeast Sugiyamaella lignohabitans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 609)
  AUTHORS   Peymann,A. and Graf,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Department of Biotechnology, University of
            Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna
            1190, Austria
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_031672).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Sugiyamaella lignohabitans"
                     /mol_type="mRNA"
                     /strain="CBS 10342"
                     /type_material="culture from holotype of Candida
                     lignohabitans"
                     /db_xref="taxon:796027"
                     /chromosome="A"
     gene            <1..>609
                     /gene="LOT6"
                     /locus_tag="AWJ20_1065"
                     /db_xref="GeneID:30032826"
     CDS             1..609
                     /gene="LOT6"
                     /locus_tag="AWJ20_1065"
                     /note="FMN-dependent NAD(P)H:quinone reductase; role in
                     apoptosis-like cell death; may be involved in quinone
                     detoxification; expression elevated at low temperature;
                     sequesters the Cin5p transcription factor in the cytoplasm
                     in complex with the proteasome under reducing conditions;
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA];
                     GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID
                     14562095]; GO_component: GO:0005829 - cytosol [Evidence
                     IDA] [PMID 17298444]; GO_component: GO:0005634 - nucleus
                     [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus
                     [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 -
                     nucleus [Evidence IDA] [PMID 17298444]; GO_function:
                     GO:0052874 - FMN reductase (NADH) activity [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]; GO_function: GO:0003955 - NAD(P)H
                     dehydrogenase (quinone) activity [Evidence IDA,IMP] [PMID
                     17298444]; GO_function: GO:0016491 - oxidoreductase
                     activity [Evidence IEA,IEA]; GO_function: GO:0008134 -
                     transcription factor binding [Evidence IDA] [PMID
                     19029946]; GO_process: GO:0006915 - apoptotic process
                     [Evidence IMP] [PMID 19709309]; GO_process: GO:0034599 -
                     cellular response to oxidative stress [Evidence IMP] [PMID
                     17298444]; GO_process: GO:0042994 - cytoplasmic
                     sequestering of transcription factor [Evidence IDA] [PMID
                     19029946]; GO_process: GO:0055114 - oxidation-reduction
                     process [Evidence IEA]"
                     /codon_start=1
                     /product="Lot6p"
                     /protein_id="XP_018735270.1"
                     /db_xref="GeneID:30032826"
                     /translation="

MTGSISSVKRVAVISGSARKNRVNPHVAEYVRQRSAEFATKNITFELVDVGEQKLPLYDEPKIPSTLPSDNPTPHYEYEHSRAWSSVVSKFDAFIFVTPQYNWSIPASLKNAIDYLFYEWAGKPAGIVSYGGHGGVRAADHLRQILTGIKIRVVPSAVALNIDRNTMQLLTLREEQLQAWKDASVDDSIKKLVEELSAELSS"

     misc_feature    28..474
                     /gene="LOT6"
                     /locus_tag="AWJ20_1065"
                     /note="NADPH-dependent FMN reductase; Region: FMN_red;
                     pfam03358"
                     /db_xref="CDD:427259"
ORIGIN      

atgactggtagtattagtagcgttaagagagtggctgttatcagtggcagtgcccgaaagaacagagtcaatccccatgtcgctgagtacgtgagacagagatctgccgaattcgccactaagaacatcactttcgagcttgtcgatgtaggagaacagaaactgcctctttatgatgaacccaagattccttcgactctgccatcagataatcctactcctcattacgaatatgagcacagtagagcctggtcatctgtagtgagcaaattcgatgcttttatatttgttactcctcagtataattggagtatccccgcatccttgaaaaatgcaattgactacctcttctatgaatgggcaggaaagcctgcaggtattgtcagttatggtggtcatggtggcgtgcgagctgctgaccatttacgccaaattcttaccggaatcaaaataagagtcgttccgagtgctgtagctctcaatattgacagaaacactatgcagctgctcactcttcgtgaagaacaactccaagcgtggaaagatgctagtgtagatgattctatcaaaaagcttgttgaggaactatcggctgagctcagttcatga

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