GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-19 16:55:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_018524371             853 bp    mRNA    linear   PLN 26-SEP-2016
DEFINITION  Alternaria alternata Cu,Zn superoxide dismutase-like protein mRNA.
ACCESSION   XM_018524371
VERSION     XM_018524371.1
DBLINK      BioProject: PRJNA342680
            BioSample: SAMN02745592
KEYWORDS    RefSeq.
SOURCE      Alternaria alternata
  ORGANISM  Alternaria alternata
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae;
            Pleosporaceae; Alternaria; Alternaria sect. Alternaria; Alternaria
            alternata complex.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Zeiner,C.A., Purvine,S.O., Zink,E.M., Wu,S., Pasa-Tolic,L.,
            Chaput,D.L., Haridas,S., Grigoriev,I.V., Santelli,C.M. and
            Hansel,C.M.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Comparative analysis of secretome profiles of
            manganese(II)-oxidizing ascomycete fungi
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 853)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2016) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 853)
  AUTHORS   Zeiner,C.A., Purvine,S.O., Zink,E.M., Wu,S., Pasa-Tolic,L.,
            Chaput,D.L., Haridas,S., Grigoriev,I.V., Santelli,C.M.,
            Hansel,C.M., Nordberg,H.P., Cantor,M.N. and Hua,S.X.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2016) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_017306193).
            
            ##Metadata-START##
            Organism Display Name :: Alternaria alternata
            GOLD Stamp ID         :: Gp0047507
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Alternaria alternata"
                     /mol_type="mRNA"
                     /strain="SRC1lrK2f"
                     /db_xref="taxon:5599"
                     /chromosome="Unknown"
     gene            1..853
                     /locus_tag="CC77DRAFT_1017268"
                     /db_xref="GeneID:29109965"
     CDS             59..793
                     /locus_tag="CC77DRAFT_1017268"
                     /codon_start=1
                     /product="Cu,Zn superoxide dismutase-like protein"
                     /protein_id="XP_018389033.1"
                     /db_xref="GeneID:29109965"
                     /db_xref="InterPro:IPR001424"
                     /db_xref="InterPro:IPR006121"
                     /db_xref="JGIDB:Altal1_1017268"
                     /translation="
MTVPSFETIFAVPMTCQSCINDIEGSLQQLGGINKVTANLKDQLVSIEGTAAPSAIVEAIQATGRDAILRGSGRSDSAAVCILESHAPHVENKVRGLVRMVEVAPSMTIIDLSIRGLSPGTYHATIRESGNISDGPESTGAIWEHHKAKQEGKPCRGVFGTVQVGKGGVGSVFLDKPIHIWEMIGRSIVVAKEQDGKFDKNDPDTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
     misc_feature    59..757
                     /locus_tag="CC77DRAFT_1017268"
                     /note="copper, zinc superoxide dismutase; Region:
                     PLN02957"
                     /db_xref="CDD:215516"
ORIGIN      
tttctaccaatagcacaaagctttaagcaggattacagctaactttacacctttcaagatgactgttccgtcgtttgaaaccatcttcgcggtgccgatgacctgccagtcatgcatcaacgacattgaaggttctctgcagcagttgggtggtatcaacaaagtcactgccaacctcaaagatcaactagtatctatcgagggtacagcagcaccatcggcaatcgttgaagctattcaagctactggtcgtgatgcaattctaagaggatctggaagatcagacagcgccgcagtttgcattctagaatcgcatgcaccgcatgtagagaacaaggttcgagggcttgtgcgcatggtggaagtggctccaagtatgaccatcattgacctgagtatacgaggattgtcgcctggaacataccatgcaactatccgcgaatctggcaacatatccgacggacctgaatctaccggcgccatctgggaacatcacaaagccaaacaggagggcaagccgtgtcgaggcgtctttggaaccgttcaggtagggaagggtggagtcggatctgtgttcctggataagcccatccacatctgggagatgatcggacgcagcatcgtagttgcaaaggagcaagacggcaagtttgataagaacgatccggatacgctagtgggtgtcattgcacgtagcgctggtgtttgggacaacgacaagacggtatgttcgtgttccggaaagacggtctggcaggagagagaggagcagcgcgaccgtgggatgctatgagctcaagacagaccaagatagcccaagaagtccacaagtgccgtcgaaatgccgtgttgg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]