2024-04-19 07:39:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018411794 1134 bp mRNA linear PLN 05-JAN-2024 DEFINITION Kwoniella dejecticola CBS 10117 glycerophosphodiesterase (I303_08537), partial mRNA. ACCESSION XM_018411794 VERSION XM_018411794.1 DBLINK BioProject: PRJNA342698 BioSample: SAMN01932837 KEYWORDS RefSeq. SOURCE Kwoniella dejecticola CBS 10117 ORGANISM Kwoniella dejecticola CBS 10117 Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Kwoniella. REFERENCE 1 (bases 1 to 1134) AUTHORS Cuomo,C., Litvintseva,A., Chen,Y., Heitman,J., Sun,S., Springer,D., Dromer,F., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Abouelleil,A., Alvarado,L., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE The Genome Sequence of Cryptococcus dejecticola CBS10117 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1134) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1134) AUTHORS Cuomo,C., Litvintseva,A., Chen,Y., Heitman,J., Sun,S., Springer,D., Dromer,F., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Abouelleil,A., Alvarado,L., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE Direct Submission JOURNAL Submitted (19-JUL-2013) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_017264926). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1134 /organism="Kwoniella dejecticola CBS 10117" /mol_type="mRNA" /strain="CBS 10117" /culture_collection="CBS:10117" /type_material="culture from type material of Cryptococcus dejecticola" /db_xref="taxon:1296121" /chromosome="Unknown" gene <1..>1134 /locus_tag="I303_08537" /db_xref="GeneID:28972236" CDS 1..1134 /locus_tag="I303_08537" /codon_start=1 /product="glycerophosphodiesterase" /protein_id="XP_018258995.1" /db_xref="GeneID:28972236" /translation="
MSIHQEINNVSRPESTLPTPALSPSNSVGPSPAFSTVLQSPAVSEFELENPFDKLEVSPDGKNDHWQIPECWGHRGASASFPENTKASFVEACKAGADGIETDIHITADNVLVMFHDPELHRTTDGEGLIHKQPWKGVLEHVRTTKAPHQPIPKFTEVLEILLQPENLNVKLNIDCKVENDPIKLFTLIKGVVEEFEGWQTKLAPRLILGIWHPKFITPAVTILPYLPRYAITMSIDQCRKYFFETCHGFSVMYPALASSEGAKFRKECQAKGKWICAWTVNDVEEMKSCGRWGIRSVISDKPELWREIRKEIETDRVKALKPTLQSLIQPFLSAKYYSFHHQRLAREETEYLEREGGTFDIVLPEISLGIAKPSIQ"
misc_feature 211..909 /locus_tag="I303_08537" /note="Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins; Region: GDPD_YPL206cp_fungi; cd08570" /db_xref="CDD:176512" misc_feature order(220..222,301..303,307..309,346..348,523..525, 628..630,835..837) /locus_tag="I303_08537" /note="putative active site [active]" /db_xref="CDD:176512" misc_feature order(220..222,346..348) /locus_tag="I303_08537" /note="catalytic site [active]" /db_xref="CDD:176512" misc_feature order(301..303,307..309,523..525) /locus_tag="I303_08537" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176512" ORIGIN
atgtcaatccaccaagagattaacaacgtctctcgacccgagtcgactctgcctactccggctctgtccccttcgaactccgtcggaccctcgccagccttctctactgttctacagtcgcctgcggtctccgagttcgagcttgagaatcccttcgataagctcgaggtttccccggatggtaagaacgatcattggcagatccccgaatgctggggccatcgaggtgcttctgcaagttttcccgagaacacgaaggcttctttcgtagaagcttgcaaggctggtgcggacggtatcgagacggacatacatatcacagccgacaacgtgctcgtgatgttccatgatcccgaactacatcgaacaaccgacggagaggggttgatccataaacaaccatggaaaggtgtcttagaacacgtgcgaacgacaaaagcacctcatcaacctatcccgaaattcacagaggtccttgagatccttctgcaacccgagaacctcaatgtaaaattgaatatcgattgtaaagtcgagaacgatcctatcaagctgttcacccttatcaaaggcgtcgtagaggaattcgaggggtggcaaaccaaattagcgcctcgattgatattgggtatctggcatccgaaattcatcacaccggcagtgacaattctcccttacttaccacgatacgcgatcaccatgtcaatcgaccaatgtcgaaaatacttcttcgaaacatgccatggtttctcggtcatgtaccctgccctggcctcgtccgagggcgccaagttccgcaaagaatgtcaagccaaggggaagtggatctgtgcgtggactgtgaatgatgtcgaggagatgaagagttgtggaaggtggggaattaggagtgtgatcagtgataaaccggagctctggagggagatccgtaaagaaatcgagacggatcgagtcaaggcgctcaaaccgactttacaatcgctcattcagcctttcttgagcgctaaatactactcgttccaccatcaacgcctggcaagagaagagacagagtacctcgaacgcgaaggaggcactttcgacatcgtccttccggaaatatcgctgggtatcgccaaaccttcgatccaataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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