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2024-04-19 07:39:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_018411794            1134 bp    mRNA    linear   PLN 05-JAN-2024
DEFINITION  Kwoniella dejecticola CBS 10117 glycerophosphodiesterase
            (I303_08537), partial mRNA.
ACCESSION   XM_018411794
VERSION     XM_018411794.1
DBLINK      BioProject: PRJNA342698
            BioSample: SAMN01932837
KEYWORDS    RefSeq.
SOURCE      Kwoniella dejecticola CBS 10117
  ORGANISM  Kwoniella dejecticola CBS 10117
            Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
            Tremellomycetes; Tremellales; Cryptococcaceae; Kwoniella.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Cuomo,C., Litvintseva,A., Chen,Y., Heitman,J., Sun,S., Springer,D.,
            Dromer,F., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M.,
            Abouelleil,A., Alvarado,L., Berlin,A.M., Chapman,S.B., Dewar,J.,
            Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C.,
            Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J.,
            Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     The Genome Sequence of Cryptococcus dejecticola CBS10117
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1134)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1134)
  AUTHORS   Cuomo,C., Litvintseva,A., Chen,Y., Heitman,J., Sun,S., Springer,D.,
            Dromer,F., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M.,
            Abouelleil,A., Alvarado,L., Berlin,A.M., Chapman,S.B., Dewar,J.,
            Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C.,
            Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J.,
            Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2013) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_017264926).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Kwoniella dejecticola CBS 10117"
                     /mol_type="mRNA"
                     /strain="CBS 10117"
                     /culture_collection="CBS:10117"
                     /type_material="culture from type material of Cryptococcus
                     dejecticola"
                     /db_xref="taxon:1296121"
                     /chromosome="Unknown"
     gene            <1..>1134
                     /locus_tag="I303_08537"
                     /db_xref="GeneID:28972236"
     CDS             1..1134
                     /locus_tag="I303_08537"
                     /codon_start=1
                     /product="glycerophosphodiesterase"
                     /protein_id="XP_018258995.1"
                     /db_xref="GeneID:28972236"
                     /translation="
MSIHQEINNVSRPESTLPTPALSPSNSVGPSPAFSTVLQSPAVSEFELENPFDKLEVSPDGKNDHWQIPECWGHRGASASFPENTKASFVEACKAGADGIETDIHITADNVLVMFHDPELHRTTDGEGLIHKQPWKGVLEHVRTTKAPHQPIPKFTEVLEILLQPENLNVKLNIDCKVENDPIKLFTLIKGVVEEFEGWQTKLAPRLILGIWHPKFITPAVTILPYLPRYAITMSIDQCRKYFFETCHGFSVMYPALASSEGAKFRKECQAKGKWICAWTVNDVEEMKSCGRWGIRSVISDKPELWREIRKEIETDRVKALKPTLQSLIQPFLSAKYYSFHHQRLAREETEYLEREGGTFDIVLPEISLGIAKPSIQ"
     misc_feature    211..909
                     /locus_tag="I303_08537"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     Saccharomyces cerevisiae YPL206cp and similar proteins;
                     Region: GDPD_YPL206cp_fungi; cd08570"
                     /db_xref="CDD:176512"
     misc_feature    order(220..222,301..303,307..309,346..348,523..525,
                     628..630,835..837)
                     /locus_tag="I303_08537"
                     /note="putative active site [active]"
                     /db_xref="CDD:176512"
     misc_feature    order(220..222,346..348)
                     /locus_tag="I303_08537"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176512"
     misc_feature    order(301..303,307..309,523..525)
                     /locus_tag="I303_08537"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:176512"
ORIGIN      
atgtcaatccaccaagagattaacaacgtctctcgacccgagtcgactctgcctactccggctctgtccccttcgaactccgtcggaccctcgccagccttctctactgttctacagtcgcctgcggtctccgagttcgagcttgagaatcccttcgataagctcgaggtttccccggatggtaagaacgatcattggcagatccccgaatgctggggccatcgaggtgcttctgcaagttttcccgagaacacgaaggcttctttcgtagaagcttgcaaggctggtgcggacggtatcgagacggacatacatatcacagccgacaacgtgctcgtgatgttccatgatcccgaactacatcgaacaaccgacggagaggggttgatccataaacaaccatggaaaggtgtcttagaacacgtgcgaacgacaaaagcacctcatcaacctatcccgaaattcacagaggtccttgagatccttctgcaacccgagaacctcaatgtaaaattgaatatcgattgtaaagtcgagaacgatcctatcaagctgttcacccttatcaaaggcgtcgtagaggaattcgaggggtggcaaaccaaattagcgcctcgattgatattgggtatctggcatccgaaattcatcacaccggcagtgacaattctcccttacttaccacgatacgcgatcaccatgtcaatcgaccaatgtcgaaaatacttcttcgaaacatgccatggtttctcggtcatgtaccctgccctggcctcgtccgagggcgccaagttccgcaaagaatgtcaagccaaggggaagtggatctgtgcgtggactgtgaatgatgtcgaggagatgaagagttgtggaaggtggggaattaggagtgtgatcagtgataaaccggagctctggagggagatccgtaaagaaatcgagacggatcgagtcaaggcgctcaaaccgactttacaatcgctcattcagcctttcttgagcgctaaatactactcgttccaccatcaacgcctggcaagagaagagacagagtacctcgaacgcgaaggaggcactttcgacatcgtccttccggaaatatcgctgggtatcgccaaaccttcgatccaataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]