2024-04-23 15:55:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018191101 3375 bp mRNA linear INV 19-SEP-2016 DEFINITION PREDICTED: Atta colombica protein argonaute-2 (LOC108686046), transcript variant X4, mRNA. ACCESSION XM_018191101 VERSION XM_018191101.1 DBLINK BioProject: PRJNA343260 KEYWORDS RefSeq. SOURCE Atta colombica ORGANISM Atta colombica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017259254.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta colombica Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3375 /organism="Atta colombica" /mol_type="mRNA" /isolate="Treedump-2" /isolation_source="Nest" /db_xref="taxon:520822" /chromosome="Unknown" /tissue_type="Whole body" /country="Panama: Gamboa" /collection_date="2011" gene 1..3375 /gene="LOC108686046" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 115 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:108686046" CDS 77..2773 /gene="LOC108686046" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_018046590.1" /db_xref="GeneID:108686046" /translation="
MYPAGQPPPPGPSTSGGSVGTAGVAASSVAAPSNMGLVPAQQAHTPPQPTELPMFTCPRRPNIGREGRPIGLRANHFQISMPRGYVHHYDISIQPDKCPRKVNREIVETMVHAYTKIFQSRKPVFDGRNNLYTRDPLPIGHDKVELEVTLPGEGKDRVFRVVIKWLAQVSLFALEEALEGRTRQIPYDAVLALDVVMRHLPSMTYTPVGRSFFSTPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGAMKRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRHPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSSLSGQTKQQAMPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRTVREDALRSFTTQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFSQLQLVCVVLPGKTPVYAEVKRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFLTVLQHELTAIREACLKLEIDYRPGITFIVVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKRVMYFA"
misc_feature 278..667 /gene="LOC108686046" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 695..847 /gene="LOC108686046" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 848..1210 /gene="LOC108686046" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1004..1006,1049..1051,1091..1093,1103..1105, 1157..1159,1178..1180,1184..1186) /gene="LOC108686046" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1346..2644 /gene="LOC108686046" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1775..1777,1787..1789,1823..1834,1841..1843, 1865..1867,1874..1876,1886..1888,1898..1900) /gene="LOC108686046" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1979..1981,1985..1987,2198..2200,2612..2614) /gene="LOC108686046" /note="active site" /db_xref="CDD:240015" ORIGIN
cagtggggtcttgtgttgaatttttttacttatttattagtgattatctggtcttttacactcaacggcagcgagaatgtaccccgcaggacaaccccccccacctggaccctcaactagtggcggttctgttgggacagcaggagtagcggcgagtagtgtcgcggctcctagcaatatggggcttgttcccgcacagcaggcacacactcctcctcaacctacagaactgccaatgtttacgtgccctcgaagaccaaacataggacgagaaggtagaccgatcggtttgagagctaatcattttcaaattagtatgccacgtggctatgtacatcactatgacattagcatacaacctgataaatgtcctcggaaagttaatagggaaattgtagaaacgatggttcatgcatatactaaaatatttcaatctcgtaaacctgtatttgatggcagaaataacttgtacacaagggaccctttgcctatcgggcatgataaagtagaattagaggtcacactgcctggtgaaggaaaagacagagttttccgagtagtcataaagtggttggcacaggtttcgctatttgctttagaagaggctttagaaggacgaactagacaaattccatatgatgctgttcttgctttagatgttgtaatgaggcatttaccatctatgacatacactccagtaggtagatcgttctttagtacgccagaaggatattaccatccattaggtggaggcagggaagtatggtttggattccatcaatcggtgagaccatcgcaatggaaaatgatgttaaatattgacgtctctgccactgccttttacaaagcgcagccagttatagaatttatgtgcgaagtgttggatattcgagatatcaatgaacagagaaaaccgctcacggattctcagagagtgaaatttaccaaagaaatcaagggtctcaagattgaaataactcactgcggagctatgaagcgaaaatatcgagtgtgcaatgttacacgtaaaccagctcaaatgcaatcatttccattgcaactggaaaatggacaaacagttgagtgtacagttgccaaatacttcttagataagtacaaaatgaaattgcgccacccacatcttccttgcctgcaagtcggccaagaacataaacacacatatttgccgcttgaggtttgcaatattgtcgccggacaacgctgcattaaaaagttaactgatatgcagacttcgactatgatcaaagcgacagcgcgttccgcaccagatcgtgaacgggaaattaataatctagttagaagggctgactttaacaatgattcttatgtacaagaatttggattgactatatcgaacagtatgatggaagtcaggggtcgtgtactacctccgcccaaactgcagtatggagggcgcgtaagttccctcagtggacagacaaagcagcaggcgatgcctaaccaaggtgtatgggatatgcgtggcaaacagttcttcactggagtggagataagagtgtgggcgatcgcttgttttgcacctcaaagaacagtacgcgaagatgcgttacgttcattcacaacacaactacagaaaattagtaatgatgctggtatgcccatcattggacaaccatgtttttgtaaatatgctactggaccagatcaagttgaacccatgtttcgatacttgaaatcgactttctcgcagctgcaattagtttgtgttgtattaccaggcaaaactcctgtatatgctgaagtaaaaagagtaggagatacattattaggcatggcaactcagtgtgtacaagcaaaaaacgtcaataaaacatcgccgcagacattatccaatctctgtcttaaaataaatgtcaaattaggaggcatcaatagcattctagtacctagcataagaccaaaagtgtttaacgagcccgttatatttcttggagctgatgtaactcacccgccggcgggagataacaaaaaacccagcatagctgctgtagtaggcagtatggatgctcatccatctcgatatgcagcaactgttagagttcagcagcatagacaagagattatccaggaattgagttcgatggttagggaattgcttataatgttttacaagagcaccggcggatacaagccacatagaataattctgtatcgcgacggcgtctccgaaggccaattcctcaccgttttgcaacacgaattgactgccattcgtgaagcatgtctcaaactcgagatcgattacagacccggtataacatttattgtagtgcagaagagacatcacacgcgtctgttttgcgcggataaaaaagaacaaagtggtaaaagtggaaatattccggcgggtacgactgtcgacgtatgcataactcacccgacggaattcgatttttatctctgcagtcatcagggtattcagggtacatcaagaccgtcacattaccacgttttatgggacgataatcactttgaaagtgatgagttacagtgtctcacgtaccaattatgtcacacttatgtcagatgtacgagatccgttagtataccagcgcctgcatattatgctcatctcgtagcattccgggctagatatcatctggtcgagaaagagcacgatagcggagaaggatctcatcaatcgggttgtagtgaggacaggacaccgggtgcaatggcgcgagcaatcacagttcatgccgacacgaaacgagttatgtacttcgcataattcttacgtcaaattgaactgtcatccaggtcggtgttgtttctgtgaagaaattgtatataattgcgactccgtgacacaagtgtgagaagtttcatcaggcagccgggattgcagcacgttgcgtcacaaattctttaacaattaggacaattcaactgataaatttcttacataccttctttctgtttttttcttttcttcattctttcttttctgtttatcaccttctctgcttttttctttattatataagtctatacgatagctttttggtatgcgtggcactgtgtgttttatttacggaagagcgaattttcgattgattttatgaacttgtagaataagtttttatgagaggtgcttttaatgcagtttgtaaatcaggttaagaatattttgcacgtttgggtataaagttgtctgcagtcgaaaattgaaaataggaatgcaccggattgtaaaattactgcatattgaatattgaatattattattttgaatattattattatccgatatttgatcagatatctggtagggcaattattcgatcagatattggatattttcccagatatatggaacaagaatttcaaaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]