LOCUS       XM_018129560            2313 bp    mRNA    linear   PLN 12-SEP-2016
DEFINITION  PREDICTED: Theobroma cacao dihydrolipoyllysine-residue
            acetyltransferase component 1 of pyruvate dehydrogenase complex,
            mitochondrial (LOC18586597), transcript variant X2, mRNA.
ACCESSION   XM_018129560
VERSION     XM_018129560.1
DBLINK      BioProject: PRJNA341501
KEYWORDS    RefSeq.
SOURCE      Theobroma cacao (cacao)
  ORGANISM  Theobroma cacao
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae;
            Theobroma.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030859.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Theobroma cacao Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Theobroma cacao"
                     /mol_type="mRNA"
                     /cultivar="B97-61/B2"
                     /db_xref="taxon:3641"
                     /chromosome="10"
     gene            1..2313
                     /gene="LOC18586597"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 11 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:18586597"
     CDS             30..1952
                     /gene="LOC18586597"
                     /codon_start=1
                     /product="dihydrolipoyllysine-residue acetyltransferase
                     component 1 of pyruvate dehydrogenase complex,
                     mitochondrial isoform X2"
                     /protein_id="XP_017985049.1"
                     /db_xref="GeneID:18586597"
                     /translation="

MALSRLRNPVISRAAPSLFKARFLSSYASPRSLSRTLNVESPFKDFNGSLLRPNSLSTIIGVCSTSSILKLQIGVRHFSSADLPEHTVLGMPALSPTMSQGNIAKWKKKEGDKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADNIQKIPSSLGSGSDVEEKTAHQDVRNSGKDEEQSSVNINALDLPPHIVIGMPALSPTMNQGNIFKWRKKEGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGEPIAVTVENPDDIEAVKTSVGGGSGVKMQKPTHHESKSEVREQKFGFTKISPSAKLLISEYGLDASSIKASGPHGTLLKGDVLAAIKSGKGSSKISSSEKIKTSPEASPQKSTSARLESKTQPQQSDSFEDLPNTQIRKIIAKRLLESKQNTPHLYLSSDVILDPLLCFRKELKEKHDIKVSVNDIVIKAVAIALKNVPEANAYWDVEKGEIILCDSVDISIAVATEKGLMTPIVRNADQKSISSISSEVKQLAEKARAGKLLPNEFQGGTFSISNLGMFPVDHFCAIINPPQAGILAVGRGNKFVEPVVGSDGIERPAVVTKMNLTLSADHRVFDGEVGGAFLSALQSNFSDIRRLLL"

     misc_feature    300..>551
                     /gene="LOC18586597"
                     /note="pyruvate dehydrogenase subunit beta; Provisional;
                     Region: PRK11892"
                     /db_xref="CDD:237011"
     misc_feature    669..1916
                     /gene="LOC18586597"
                     /note="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase, long form; Region: PDHac_trf_mito;
                     TIGR01349"
                     /db_xref="CDD:273567"
ORIGIN      

ttcgtatcgccgtagaccgagcactttcaatggcgctttcacggcttagaaacccagtaatctcaagagccgccccatctctcttcaaagctcggtttctctcttcctacgcctcacccagatcactttctcgcactttaaatgtggaaagccctttcaaggactttaatggctctctattaaggcccaattctttatccaccattattggggtttgcagtacttcatcaattctcaagttgcagattggagttcggcatttctcatctgcagaccttcctgagcatacagtcctggggatgcctgctttgtctccaacaatgagccaaggaaacattgcaaaatggaagaagaaagaaggagataagattgaagtgggtgatgtactctgtgaaatagagacagataaagccacacttgagtttgaaagtcttgaagaagggtttttggccaagatactagtacctgaagggtcaaaggatgtgcctgtgggacaacctattgcaataacggttgaggatgcagataatatccagaagatcccttctagtcttgggagtggatcagatgttgaggaaaaaacagcccatcaggatgtgagaaactccggaaaagacgaggaacaaagttctgttaacatcaatgcattagacctccctcctcacattgtaattggaatgccagcactctctccaacaatgaaccagggtaacatctttaagtggaggaaaaaagaaggggacaagatagaagtgggcgatgtgatatgtgagattgagactgacaaagctaccctcgaatttgagagccttgaagagggttacctggcaaagatactggctcctgaaggttcaaaggatgtggctgtgggagaaccaattgcagtaacagttgaaaatccagatgatattgaagctgtaaagacttctgttggtggtggttcaggggttaaaatgcaaaaacctacccatcatgaatctaaaagtgaagttagagagcagaagtttggttttacaaagatcagtccatcagccaagttgcttatttcagaatatggattagatgcatcatcaataaaggcatcaggtcctcatggtactttgttgaaaggggatgttttggctgcaattaagtctggaaaaggatcttctaaaatttcttcatctgagaagataaaaacatcacctgaagccagccctcaaaaatctacttcagcaaggctagagtcaaagactcagccacagcaatcagattcttttgaagacttgcccaatactcaaattcgcaagattattgcgaagaggttattggaatcaaaacagaatacaccacatttatatctatcttcagatgttatactggatcctcttctttgttttaggaaggagcttaaagagaagcatgatataaaagtttcagtgaatgacattgtcattaaagcggtggcaattgctctgaaaaatgtacctgaagctaatgcttattgggatgttgagaaaggggaaataattttgtgtgattctgttgacatatcaattgcagttgctactgagaagggtttaatgactccaatcgtaaggaatgcagatcagaaatccatttcatcaatctcctcagaggtcaagcaactagctgaaaaggcaagggctggaaagcttttaccaaacgaatttcaaggaggaacctttagcatttcaaatctgggaatgtttcctgtcgaccatttttgtgcaattataaatcccccacaggctggtatccttgctgttggtagaggaaacaaatttgttgaaccggtcgttggaagtgatgggattgagaggcctgcagttgtgacaaaaatgaacttgacattatctgctgaccatcgtgtgtttgacggcgaagttggaggtgcatttctttcagcattacaatctaacttcagtgatattcggaggcttcttctctgataacatttcgtcatcgaaattttggagagatcagctttggtggagggtctctttcttgaagatagttaataattcttggaaaggatcatgttatttgttccagaacccattgcggcagcgaatttgttgtgcaattctggttaccaaaattttgtcaataacgagaacgccagtgatgtaaaattttgcatgatattaggttaccagtgtcatcagattttgatgccatcttgagggcttattctgcaatttcatgattccatctaatagaaatgattgatggaaaaatacgaataccaaatcaataatgattctctttcatgtattctgtttacatttcatttaggtttcgtttggttaa

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