2024-04-26 04:55:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018129559 2316 bp mRNA linear PLN 12-SEP-2016 DEFINITION PREDICTED: Theobroma cacao dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial (LOC18586597), transcript variant X1, mRNA. ACCESSION XM_018129559 VERSION XM_018129559.1 DBLINK BioProject: PRJNA341501 KEYWORDS RefSeq. SOURCE Theobroma cacao (cacao) ORGANISM Theobroma cacao Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030859.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Theobroma cacao Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2316 /organism="Theobroma cacao" /mol_type="mRNA" /cultivar="B97-61/B2" /db_xref="taxon:3641" /chromosome="10" gene 1..2316 /gene="LOC18586597" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:18586597" CDS 30..1955 /gene="LOC18586597" /codon_start=1 /product="dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1" /protein_id="XP_017985048.1" /db_xref="GeneID:18586597" /translation="
MALSRLRNPVISRAAPSLFKARFLSSYASPRSLSRTLNVESPFKDFNGSLLSRPNSLSTIIGVCSTSSILKLQIGVRHFSSADLPEHTVLGMPALSPTMSQGNIAKWKKKEGDKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADNIQKIPSSLGSGSDVEEKTAHQDVRNSGKDEEQSSVNINALDLPPHIVIGMPALSPTMNQGNIFKWRKKEGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGEPIAVTVENPDDIEAVKTSVGGGSGVKMQKPTHHESKSEVREQKFGFTKISPSAKLLISEYGLDASSIKASGPHGTLLKGDVLAAIKSGKGSSKISSSEKIKTSPEASPQKSTSARLESKTQPQQSDSFEDLPNTQIRKIIAKRLLESKQNTPHLYLSSDVILDPLLCFRKELKEKHDIKVSVNDIVIKAVAIALKNVPEANAYWDVEKGEIILCDSVDISIAVATEKGLMTPIVRNADQKSISSISSEVKQLAEKARAGKLLPNEFQGGTFSISNLGMFPVDHFCAIINPPQAGILAVGRGNKFVEPVVGSDGIERPAVVTKMNLTLSADHRVFDGEVGGAFLSALQSNFSDIRRLLL"
misc_feature 303..>554 /gene="LOC18586597" /note="pyruvate dehydrogenase subunit beta; Provisional; Region: PRK11892" /db_xref="CDD:237011" misc_feature 672..1919 /gene="LOC18586597" /note="pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; Region: PDHac_trf_mito; TIGR01349" /db_xref="CDD:273567" ORIGIN
ttcgtatcgccgtagaccgagcactttcaatggcgctttcacggcttagaaacccagtaatctcaagagccgccccatctctcttcaaagctcggtttctctcttcctacgcctcacccagatcactttctcgcactttaaatgtggaaagccctttcaaggactttaatggctctctattaagcaggcccaattctttatccaccattattggggtttgcagtacttcatcaattctcaagttgcagattggagttcggcatttctcatctgcagaccttcctgagcatacagtcctggggatgcctgctttgtctccaacaatgagccaaggaaacattgcaaaatggaagaagaaagaaggagataagattgaagtgggtgatgtactctgtgaaatagagacagataaagccacacttgagtttgaaagtcttgaagaagggtttttggccaagatactagtacctgaagggtcaaaggatgtgcctgtgggacaacctattgcaataacggttgaggatgcagataatatccagaagatcccttctagtcttgggagtggatcagatgttgaggaaaaaacagcccatcaggatgtgagaaactccggaaaagacgaggaacaaagttctgttaacatcaatgcattagacctccctcctcacattgtaattggaatgccagcactctctccaacaatgaaccagggtaacatctttaagtggaggaaaaaagaaggggacaagatagaagtgggcgatgtgatatgtgagattgagactgacaaagctaccctcgaatttgagagccttgaagagggttacctggcaaagatactggctcctgaaggttcaaaggatgtggctgtgggagaaccaattgcagtaacagttgaaaatccagatgatattgaagctgtaaagacttctgttggtggtggttcaggggttaaaatgcaaaaacctacccatcatgaatctaaaagtgaagttagagagcagaagtttggttttacaaagatcagtccatcagccaagttgcttatttcagaatatggattagatgcatcatcaataaaggcatcaggtcctcatggtactttgttgaaaggggatgttttggctgcaattaagtctggaaaaggatcttctaaaatttcttcatctgagaagataaaaacatcacctgaagccagccctcaaaaatctacttcagcaaggctagagtcaaagactcagccacagcaatcagattcttttgaagacttgcccaatactcaaattcgcaagattattgcgaagaggttattggaatcaaaacagaatacaccacatttatatctatcttcagatgttatactggatcctcttctttgttttaggaaggagcttaaagagaagcatgatataaaagtttcagtgaatgacattgtcattaaagcggtggcaattgctctgaaaaatgtacctgaagctaatgcttattgggatgttgagaaaggggaaataattttgtgtgattctgttgacatatcaattgcagttgctactgagaagggtttaatgactccaatcgtaaggaatgcagatcagaaatccatttcatcaatctcctcagaggtcaagcaactagctgaaaaggcaagggctggaaagcttttaccaaacgaatttcaaggaggaacctttagcatttcaaatctgggaatgtttcctgtcgaccatttttgtgcaattataaatcccccacaggctggtatccttgctgttggtagaggaaacaaatttgttgaaccggtcgttggaagtgatgggattgagaggcctgcagttgtgacaaaaatgaacttgacattatctgctgaccatcgtgtgtttgacggcgaagttggaggtgcatttctttcagcattacaatctaacttcagtgatattcggaggcttcttctctgataacatttcgtcatcgaaattttggagagatcagctttggtggagggtctctttcttgaagatagttaataattcttggaaaggatcatgttatttgttccagaacccattgcggcagcgaatttgttgtgcaattctggttaccaaaattttgtcaataacgagaacgccagtgatgtaaaattttgcatgatattaggttaccagtgtcatcagattttgatgccatcttgagggcttattctgcaatttcatgattccatctaatagaaatgattgatggaaaaatacgaataccaaatcaataatgattctctttcatgtattctgtttacatttcatttaggtttcgtttggttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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