2024-04-25 21:11:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018056698 6330 bp mRNA linear MAM 08-SEP-2016 DEFINITION PREDICTED: Capra hircus ATPase copper transporting beta (ATP7B), transcript variant X1, mRNA. ACCESSION XM_018056698 VERSION XM_018056698.1 DBLINK BioProject: PRJNA340281 KEYWORDS RefSeq. SOURCE Capra hircus (goat) ORGANISM Capra hircus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030819.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Capra hircus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6330 /organism="Capra hircus" /mol_type="mRNA" /db_xref="taxon:9925" /chromosome="12" /sex="male" /tissue_type="blood" /dev_stage="adult" /breed="San Clemente" gene 1..6330 /gene="ATP7B" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:102183524" CDS 1..4518 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X1" /protein_id="XP_017912187.1" /db_xref="GeneID:102183524" /translation="
MERAGDQTPGNPEPSSLATLGDPQVTLLTVHKQWSFKRSPGTGGSSRPVISEEECPPPSEEGEFSQKVLNGSEEISSKQILSKLFQPAMKQSFAFDNNGYEDDLDGVCPSQTAAGTISIVGMTCQSCVKSIEGRVSSLKGIVSIKVSLEQGSAEVRYVPSVVSLMQICHQIEDMGFQASVAEGKATSWASRVSPTSEAVVKLRVEGMTCQSCVSSIEGKIGKLQGVVRVRVSLSNQEAVITYQPYLIQPQDLRDHITDMGFEAVIKNKVAPVSLGPIDVRRLQSTLSAAPPTPVNQNDNNSETPGGQGVPLHLRVDGMHCKSCVLNIEDNIGQLPGVQSIHVSLESRTAQVQYDPSLVSPGALQRAIEALPPGNFKVSFPNGAEGSGPDSRTPPAPSAPCTMMLAIAGMTCKSCVQSIEGLISQRAGVHQISVFLAEGTAVVLYDPSRTHPEELRAAVEDMGFEASILAENCSSNQVGNHSAGSAMGPAAAGTPVPMQEEAPQPGGLHTNHIPRQSPKSLPASTTVAPKKCFLQISGMTCASCVSNIERNLQKEPGILSVLVALMAGKAEVKYNPEAIQPLEIAKLVQDLGFEAAVMEDYTGSDGDLELMITGMTCASCVHNIESKLRRTEGITYASVALATSKAHVKFDPEIIGPRDIVKLIEEIGFRASLAQRIPNAHHLDHKVEIKQWKNSFLCSLVFGIPVMGLMIYMLIPSHEPQSSVLDHNVVPGLSILNLVFFILCTFVQFLGGWYFYVQAYKSLRHGMANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHVVKSKTSEALAKLMSLQATEATVVTLGEDNVIIREEQVLMELVQRGDIIKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSMVIAGSMNAHGSVLITATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTVTLVVWIVIGFIDFGVVQKYFPAPSKGISQAEVVLRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPKVSRVLLLVDVATLPLRKVLAVVGTAEASSEHPLGVAVTRHCKEELGTETLGCCMDFQAVPGCGISCKVSNVESILAQGERPQGPPTAHQNRVGSEPSETDAATQTFSVLIGNREWMRRNGLTVTSDVRDAMTDHETKGQTAILVAIDGVLCGMIAVADSVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKRVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSRRTVWRIRLNLVLALIYNLIGIPVAAGVFIPIGVVLQPWMGSAAMAASSVSVVLSSLQLKCYRKPDLAQYEAQAHGHMKPLSASQVSVRVGMDDRRRDSPRASAWDQVSYVSQVSLSPLKSDKLSRHSGAADDRGDKWSLLLNDRDEEQGI"
misc_feature 346..537 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(364..372,379..381) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 601..789 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(619..627,634..636) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 937..1110 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(952..960,967..969) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1207..1398 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1225..1233,1240..1242) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1597..1785 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1612..1620,1627..1629) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1822..2013 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1840..1848,1855..1857) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2077..4182 /gene="ATP7B" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3067..3069,3073..3075,4111..4113) /gene="ATP7B" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3199..3207,3409..3411,3562..3570,3658..3660, 3778..3786,3844..3846,3853..3855,3862..3864,3919..3921, 3928..3930) /gene="ATP7B" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
atggagagagctggggaccagacccccgggaaccccgagccatcctccctggcgactctgggtgacccacaggtgaccctgctgactgtccacaaacaatggtccttcaagaggagccctgggaccgggggctccagcaggccggtgatttcagaggaggaatgccctcccccatcagaggaaggagaattttcacagaaggttttgaatggatcggaagagatcagttccaagcagatcctgtctaagcttttccagccagcaatgaagcagagctttgcctttgacaacaatggctacgaggatgacctggatggcgtgtgcccctcccagacggccgctggcaccatcagcattgtgggcatgacctgccagtcgtgtgtcaagtccatcgagggcagggtctccagtttgaaaggcattgtgagcattaaggtttccctggagcagggcagtgctgaggtgagatacgtgccctcagtggtaagcctgatgcagatttgccatcagattgaagacatgggcttccaggccagtgtggccgagggaaaggccacctcctgggcctccagggtctcgcccacctcggaggccgtggtcaagcttcgggtggagggcatgacctgccagtcctgtgtcagctccatagaaggcaagatcgggaaactgcagggcgtcgtgagggtccgcgtctcgctcagcaaccaggaggcagtcatcacttaccagccttaccttatccaaccccaagacctcagggaccatataaccgatatggggtttgaagccgtcatcaagaacaaggtggccccagtaagcctgggacccatagacgtcaggcgactccagagcaccctctcagcggcccctccaactcccgttaatcagaatgacaataactctgagaccccagggggccagggggtccccctgcacctgagagtggatggaatgcactgtaagtcttgtgtcctgaacattgaagacaatatcggccagctccccggggttcagagtattcacgtgtccctggagagcaggaccgcccaagtccagtacgacccttctctcgtctccccaggggccctgcagagggccatcgaggccctgcctcctgggaactttaaagtctcttttcccaatggggcggaagggagtgggccagactccaggacccccccggcacccagtgcgccctgtaccatgatgctggccattgctggcatgacctgtaagtcctgcgtccagtccatcgaaggcctgatctcccagagggcgggcgtgcaccagatctcagtctttttggccgaaggaactgcagtggttctctatgatccatctcgaactcacccagaagaactgcgagccgcggtggaggacatgggattcgaggcctccatcctggctgaaaactgttccagcaaccaggttggcaaccacagtgctgggagtgccatggggcctgcggcagctggcacacctgtgcccatgcaggaagaggctccccagccaggggggctccacactaaccacatcccccgccagtcgcccaagtccctcccggcctccaccacggtggccccaaagaagtgcttcctacagatctcaggcatgacctgtgcgtcctgtgtgtccaacatagagaggaacctgcagaaagaacctgggatcctgtctgtgctggttgccctgatggcaggaaaggcagaggtgaagtacaacccggaagccatccagcccctggagatagcaaagctcgtccaggacctgggctttgaggcagcagtgatggaagactacacgggctcggatggcgacctcgagctgatgatcacggggatgacctgcgcctcctgtgttcacaacatagagtccaaactcaggaggacagaaggcatcacctacgcctctgtggctctcgccaccagcaaagcccacgtgaagtttgatcctgaaattattggtccgcgggatattgtcaaacttatcgaggaaattggctttcgtgcctccctggcccagaggatccccaacgctcatcacttggaccacaaggtggaaataaagcagtggaagaactctttcctgtgcagcctggtgtttggcatccccgtcatgggtttaatgatctatatgttgatacccagccatgagcctcagtcctcagtccttgaccacaacgtcgtcccaggactgtccatcctgaatctcgtcttctttatcttgtgcacctttgtgcagttccttggcggctggtacttctatgtccaggcctacaaatctctgagacacgggatggccaacatggacgtgctcatcgtgctggccacgagcatcgcctacgtctactccctcgtcatcctggtggtggccgtggccgagaaggccgagaggagccccgtgaccttctttgacacgccccccatgctcttcgtcttcatcgccctggggcggtggctggaacacgtggtgaagagcaaaacctcagaagcgcttgccaaactcatgtctctgcaagccacggaagccaccgtcgtgacccttggtgaagacaacgtgatcatcagggaggagcaggtgctcatggagctggtgcaacgaggtgacatcatcaaggtggtccccgggggcaagtttcccgtggacgggaaagtcctagaaggcaacaccatggccgacgagtccctcatcacaggagaggccatgcctgtcaccaagaagcccggaagcatggtaatcgccgggtccatgaacgcccatggctctgtgctcatcactgccacccacgtgggcaatgataccaccttggcccagattgtgaagctagtggaagaggcccagatgtccaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatttcaactgtgacgttggtggtatggattgtaatcggttttatcgattttggtgttgttcagaaatactttcctgcccccagcaagggcatctcccaggccgaggtggtcctgcggttcgcgttccagacgtccatcacggtgctctgcatcgcctgcccctgctcgctgggcctggccacgcccacggccgtcatggtgggcaccggggtggccgcccagaacggcatcctcatcaagggcggcaagcccctggagatggcccacaagataaagaccgtgatgttcgacaaaaccggcaccattacccacggggtccccaaagtctcgagggtcctcctgctcgtggacgtggccacgctgcccctgcggaaggtgcttgctgtggtggggaccgcggaggccagcagtgagcaccccctgggcgtggcagtgaccagacactgtaaagaggaacttggcacggagaccctggggtgctgcatggacttccaggcggtgcccggctgtggaatcagctgcaaagtcagcaacgtggagagcatccttgcccagggcgagcgcccgcagggcccaccaactgctcaccagaacagagtcggcagcgagccctcagaaacagacgcagccactcagaccttctctgtgctgatcggaaaccgggaatggatgaggcgcaacggcctgaccgtcaccagcgacgtccgcgacgccatgaccgaccacgagacaaagggccagacggccatcctggtcgccatcgatggtgtactgtgcggcatgatcgccgtcgcggactcggtcaagcaggaggccgccctggccgtgcacacgctgaagagcatgggcgtggacgtggtgctcatcaccggggacaaccgcaagacagccagggccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttctcacaaggtggccaaagtccaggagctgcagaaccaggggaagagagtggccatggtgggcgacggcgtgaacgactccccagccctggcgcaggctgacgtgggcattgccatcggcacgggcactgacgtggccatcgaggcggccgacgtcgtcctcatcaggaatgacctgctcgatgtggtggccagcatccacctctccaggaggaccgtctggagaatacggctcaacctggtgctggcgctgatctacaacctgatcgggatccccgtcgcggcaggtgtcttcatacccattggcgtcgtgctgcagccgtggatgggctcagcggccatggcggcctcctccgtgtctgtggtcctctcgtcactgcagctcaagtgctacaggaagccggacctggcgcagtacgaggcgcaggcgcacggccacatgaagcccctgagcgcgtcgcaggtcagcgtgcgcgttggcatggacgaccgccggcgcgactccccgcgggcctcggcctgggaccaggtcagctacgtcagccaggtgtccctgtcccccctcaagtccgacaagctgtcccggcacagtggcgcggccgacgacaggggcgacaagtggtctctgcttctgaatgaccgggacgaggagcagggcatctgaaagccgcccccgcggctgaggctcccagcccgcagcggcagcagcaggcggccgagcccctccaggcctaggcgaacattctggatcaccccttccctgcgcccgggggcgcgattccccgggttccatgggctcaggggaaggcgtgcttgcctacgcgctcgtgggctcatcggacaccttgctgcggcctcaagaagaggaaggacaagccctcctcgcatcccctgccttagcatttgtgacacgaccagtctcattgggtccagcatcttcgctgcgcccctccacagagctcatagaaacttcggggtctggctctttctgacagcacccgtgcgcatcgcgtgcctgagaccacctgtacctcaggcgcccccttgttttctgctggggccttctcttcctcctctgcccttgacagtgggggtgtgacaccccgtcatctgagggcagggctgacatcctcacatcctctctgctgctctccaaggggctcctgtgctcctgcctgaaccccttgcccacgcaaccaccagaaagcctgccacacttctccttggtgaccagaggtcttggttgcccgcgaaccgcttcttcctagagtcccggcttctcatgcttaatccagtgtggttgctgactgtcgctgcctagctgggctgagggtctgagagcctgaggcttgagaaattcggcttcctgtggggtcctgggggaggcatgtggctcaagatactgcttgcctggtttcaggggcttcagttgcatggcctgtggtgtgacagtcacctcacagggtctggtatggggttcaggtctgtgctccccagagctgcgcagccctggggcagtgagacccaagtaagaggacaccccagccctccacacgcttcgactcctgcacatggagctggtgccttaggaagggggggggggtgcccaccactcccaagggaactgtttctaacttccagtggcctttatggttgcatgataatcagcgcaacagcagtgggcccacggcagactccgagcttggtggtgattggcagagcctgtggaggtctggtaatgctagccaaatctgactaagtgagtagagcctgttctcagtttcaagggagaagcccttatcacacacttcacgcacactttagttatttattgtcagttatttttcagggggatataagcactttttattgcttacctctaatcgtcacaatgaactagcaaagtagatacaacattgtccacatttcacacaggcgggaaacaggctcagagaggctaggaatcccgccaaggatcacacagcaagtgtgcgtgccggagcagggatctgaattcatgtccgcgggccctgaagtcttttcgctaatttggccctaccgtcaactgtttgtttgataagaagcaacaaggaaaaagcccttgttcctggaagaacaaagctgccaggtgacgtattccctgaactggcttgaaatgtgacctcgaggtcatgtcacattgcctttggatagctccttcccatttgcatgtcattgagtctatgctgcatcttaccctctaaaatccgtgtgcagggtggaggtgtggttttgtttccagtcttccttccccagccccgtcctgctgtgttctcagttgtgtccttctccgttcccagctgctgctctgggaatgtttcctgtttccttggagaaggctaatcatatctaaagaatacaattgtatcaacttttcaaaaagcttttaggaccataaatgttatgtgtatagggacatggagatatttatgtaatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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