2024-04-26 07:15:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018053845 5226 bp mRNA linear MAM 08-SEP-2016 DEFINITION PREDICTED: Capra hircus NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_018053845 VERSION XM_018053845.1 DBLINK BioProject: PRJNA340281 KEYWORDS RefSeq. SOURCE Capra hircus (goat) ORGANISM Capra hircus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030817.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Capra hircus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5226 /organism="Capra hircus" /mol_type="mRNA" /db_xref="taxon:9925" /chromosome="10" /sex="male" /tissue_type="blood" /dev_stage="adult" /breed="San Clemente" gene 1..5226 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:102190524" CDS 112..3573 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_017909334.1" /db_xref="GeneID:102190524" /translation="
MALFPAFAGVAEAPDGGRKELDWLSNPSFCVGAITSLSRQSQEATAAPVSEGSPLTRSPLKSEPSDESDTNRKPRETSRKKKKEKKKKRKLLRHKKTKRKRGSSGSSGSESDTDSEKDRPSRSVRDSKRESEKQNQGNNAAAVTGRHCVWLEDIQALTGETFRMDKKPDPANWEYKSLYRGDIARYKRKGDSCLGLNPKKQCVSWEGTSTEKRRSRKHVERYFTKKSVGLMNVEGLAVSRQPGAPSSEPLSFIPVKGVDDAAPPATSWLNPLGIYDQATTQWLQGQGPSEQESRPPDSQPDREGALLKARVEEFNRKVHENPRDTELWMAFVAFQDEVMRRPGLYAVEEGEPETRKRSLRLVLEKKLAILERAIESNPSSVDLKLAKLKLCTEFWEATTLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIQSLYGKCLSTLSAVRDGSIVSHPELPGTEEAMFALFLQQCHFLRQAGHTEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVAVGPDDDDEEPADEDQEIRDKTLPRWQIWLAAERSRDRRHWQPWRPDKARQQTEEDCEDPERQVLFDDLGQSLIRLSSPDLQFQLIAAFLQFLGVPSGFRAPASCLYLAMDENSIFDNELYDEKPLTLPDLSCSGVGCVGCMEPLGGRRWPRGPSREGEEFIRNVFHLVLPLFAGREQSQLCVSWLQYEITKVIWCLHTKNKKRLKSQGKNCRKLAKNLLKEPDNRNSFCLWQQYALLEWLLGNTEDARKVFDAALGTAGSRGLEDPELCELGLLYGALEAELSPPVGGAAPARAVHVLTRLTERGPYAPCTGPVSAVRVLKARKAYEHALQGHLGERGPDPGPPGRGSRLVSLAKCFMLFQYLTVGVQAAGRVYEQVSAELRGSVSAEGAGLEGALEAVTLMHTSLLRFHSRVAAHPLAPLREALSEALRLYPGNQLLWRAYVQIQGKSHSASRTRRFFHTITRSTELLEPWLFAIEAERMRKRLVDAVQRVDGREVHATLPETGLTHRIRALFESAVRSDHGSQCPLLWRMYLSFLVSLGNKERSKGVFYKALQNCPWAKALYLDAVQYFPDEVQEVVDLMTEKELRVRLPLEELELLLE"
misc_feature 592..879 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(592..618,625..630,640..645,649..651,655..699, 706..714,718..726,748..756,766..771,775..780,787..807, 829..834,853..879) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1048..2046 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
acagagaaaaccacacttcccagagtgcaccgcccccgcaacggccttagggtcggcctcgggctcccggagccatctttgtggggtgaggaggcggcgcggcctgggaccatggcgctcttccccgcctttgcgggtgtcgccgaggctccggacggcgggaggaaagaattagactggctgagcaacccaagcttctgtgttggagccataacatctctgagccgacaatctcaagaggccaccgcagcccctgtttctgaagggtcaccgctgacaaggagtcctctgaaatcagagccttcagatgaaagtgacactaacagaaagcccagagaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcttctgcgccacaagaaaaccaagagaaaacgtgggtcgtcaggtagcagtgggtctgagtcagacactgattctgaaaaggacagaccttccagaagcgtcagagacagtaaaagagaatcagagaaacagaatcaaggaaataatgctgccgcggttaccggacgtcactgtgtttggcttgaggacatccaggctctgacgggagaaaccttccgaatggataagaaaccggatcctgccaactgggagtacaagtctctttaccgaggagacattgccagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcagtgtgtatcttgggaggggacttccacagaaaagaggcgttcccgcaagcacgtggagcgctactttacgaagaagagcgtggggttaatgaacgtggagggcctcgccgtcagcaggcagcccggagctccgtcgtcggagccgctctcctttatcccggtgaagggcgtggacgacgcggctccccctgctaccagctggctgaaccctctggggatttacgatcaagccactacacagtggttacagggacagggtccttcagagcaggagtccaggccaccagactcacagcccgacagagagggcgcgctcctcaaggccagggtggaggagtttaacaggaaggttcacgagaaccctcgggacacagagctgtggatggcctttgttgctttccaggacgaggtcatgagaagaccgggcctctatgccgtggaggaaggagagccggagacacggaagcggtccctgcggctggtcctggagaagaagctggccatcctggagcgggccatcgagagcaacccgagcagcgtggacctgaagctcgccaagctgaagctctgcaccgagttctgggaggccaccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttttgccagagccagttcagcaccttctctgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggatggcagcatcgtctcccaccctgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggctggccacaccgagaaggccgtgtctctcttccaggccatggttgacttcacgttcttcaagcctgacagtgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccggggctggagagcctggatgcaccagcaggagcggggcggctgggtggccgtcggcccagatgatgacgacgaggagccggcggacgaggaccaggagattagagacaagacgctgccccgctggcagatctggctggccgccgagcggtcccgagaccgcagacactggcagccgtggcgcccggacaaggccaggcagcagacggaggaagactgcgaggaccccgagagacaggtgttgtttgacgatctcggccagtctctgatccgactgtccagcccggatctccagtttcagctgattgcggccttcctgcagttcctgggggtgccttccggcttccgcgcccccgcctcctgcctctatctggccatggacgagaacagcatcttcgacaacgaactttatgacgaaaagcccttgactctccccgacctctcctgctctggcgtcggctgtgtgggctgcatggagcctctgggcggccggcgctggccccggggtcccagtcgagagggcgaggagttcatccgcaacgtcttccacctggtgctgcctctgtttgcaggcagggagcagtctcagctctgcgtctcctggctacagtacgagatcaccaaggtcatttggtgcctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcagaaaactagccaagaatctcctcaaggagccggacaaccgcaacagcttctgcctctggcagcagtatgcgcttctggagtggttgctgggcaacacagaggacgcccggaaggtcttcgacgcagccctgggcaccgcagggagccggggcctggaggacccggagctctgcgagctcggcctgctctacggtgcgctggaggcggagctgtcgccgcccgtgggcggggccgccccagcccgggccgtgcacgtgctgacccggctgactgagcgcggcccctacgcgccctgcacgggaccggtctcggccgtgcgcgttctgaaggctcggaaggcatacgagcacgcgctgcagggccatctaggggagcgcgggcctgacccgggcccccctggccgcggcagccgcctggtcagcctggcgaagtgcttcatgctcttccagtacctgaccgtcggggtccaggccgctgggcgcgtctatgagcaggtgtctgcggagctccggggctctgtctccgcggagggcgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacagcagggttgctgcccacccactggctccgctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcaaggcaagtcgcacagcgccagcaggaccagaagattcttccacaccatcaccaggtccaccgaactcctggagccgtggctgtttgcgattgaagcggagaggatgcggaagaggctggtggacgccgtgcagagggtggacggtagagaggtccatgccacccttcctgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagtgaccacgggagccagtgccccttgctgtggaggatgtacctgagcttcctggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaaggcgctgtacctggacgccgtgcagtacttccccgacgaggtgcaggaggtcgtggacctgatgacggagaaggagctgcgggtgcgcctgccgctcgaggagctggagctgctgctggagtagacgccggggcggggcctgccccgagacagggcacgcgcgcgcccagacctctgccctgaaggctcctccctgacggtgtgtctgggctcaggctcccccctggacagtgtgcgcatgtgaaacggcgcacagctgctttgcacacgatacatgtgaacgtgtgtctatacgtgcagacaagaatcacgccgaggctgccgtggctggtgcgggtccttctggcccaccctcccctgcacagcccgggtgaaggtcctcctgtgggcgtccttggggaccctgccaagcctcctggctcttgcagtcagaagaaaggtctggttactcaccaggccctcctgcctgtggctggtgagccgagtctgccgttccttcagaccagagcagcttggagtcgtgtgaagcttggagtcttcagctgcattacacgtgtccttcctgtttccggagctccactcgcggacgtttcacctgcagacccggcagccagcgtcgccggaagcttgcgtgcgcggagaccccgggcccgcccggccctgcggagtccgatggggctgtaggagggcccagtgtcaggggactgaacaaatcaggaccccgctgcaggggagggggcccgggtccaactgcggagagcgcggcctgctcctccccggcaagtctctgcctcagaagacgccgaactttcgctttcaaccgcgcgctcattccgatttccaagagcggtgatccacagccgatggagtggaaatgcttttgtcttctccgaggtcctgctttttaaaacacagtggacttctccgcgttgcgtttcttcttaaatcatgccccccagaactgctgaaagcgaatttccttggctcctcatccagaaaagcgggtgttgtggaacctgggctagaaacggccgtccgtccagggagaaggggcccgttctccagtgggtcgctgggtctcggggctctgaggctgaactgagcagaggcgaggagagcgcggggcagagggagccaggcgaggggcggcgcctgtgcttccgaacgagggaggggcgccgacctccgcagggctgccctgggggtcttcagccgcgccccttggaaattccattgggaaccccatctcagcagcaccagaccctccttcttgccccagaccctccaagggcagccccggctggtggggggtcgcagcctttgttgcctccacagcaggggtggctggccgtgggctcacaagccagcagctgctgttttagagctggcgccgcctcggcgctgtgccgcaggggcagcagagacccagtcggcagtgccctggtccccagaggcttccccacacctgggcccacccactcctctgcccaagcacccagcgtgtggacaggactccgtgttacagaaagcacgctttattgggacgcaggcagcctgccagggccctacacactgcgcttgggaggaacacgagacgctctgccaaccgtggccagcaggcacgggcgcccaggcagcctccctcccaacctcacccctccagggcccgggaccctccccgcctctcccggaaggccactctggccctctagagatagagcccctcgggggtgccttcctgttttttataaagaacgttttccttggacttcttgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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