2024-04-18 05:40:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017858275 6443 bp mRNA linear PRI 24-AUG-2016 DEFINITION PREDICTED: Rhinopithecus bieti ATPase copper transporting beta (ATP7B), transcript variant X4, mRNA. ACCESSION XM_017858275 VERSION XM_017858275.1 DBLINK BioProject: PRJNA339282 KEYWORDS RefSeq. SOURCE Rhinopithecus bieti (black snub-nosed monkey) ORGANISM Rhinopithecus bieti Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016819110.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rhinopithecus bieti Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6443 /organism="Rhinopithecus bieti" /mol_type="mRNA" /isolate="Rb0" /db_xref="taxon:61621" /chromosome="Unknown" /sex="male" /tissue_type="blood" gene 1..6443 /gene="ATP7B" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 97 ESTs, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:108519344" CDS 85..4386 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X3" /protein_id="XP_017713764.1" /db_xref="GeneID:108519344" /translation="
MKKSFAFDNVGYEGGLDGLGPSSQVDTSTIRILGMTCQSCVKSIEDRISSLKGIVSMKVSLEQGSATVKYVPSVVSLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVGSIEGKVGKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKNKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNNSETLGHQGRNVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVQYDPSCTSPVALQMAIEALPPGNFKVSLPDAAEGSGIDHRSSSSHSLGSSPRNQVQSTCSTTLIAIAGMTCASCVHTIEGMISQLEGVQQISVSLAEGTGTVLYNPSVISPEELRAAIEDMGFEASVVSENCSTNPLGNHSAGNSMVQTIGGTPTSVQEVAPHAGRLPTNHVPDIWAKSPQSTRAVAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEVKYDPEVIQPLEIAQLIQDLGFEAAVMEDSAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHQSMVLDHNIIPGLSILNLIFFILCTFVQVLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHLAKSKTSEALAKLMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPLIIIMSTLTLVVWIVIGFIDFGVVQKYFPNPSKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGNLPAEKDAAPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKRVAMVGDGINDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRIVRRIRINLVLALIYNLVGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQAHGHMKPLTASQVSVHIGMDDRRRDSPRATPWDQVSYVSQVSLSSLTSDKPSRHSTAADDGGDKWSLLLNDRDEEQYI"
misc_feature 169..360 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(187..195,202..204) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 424..615 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(442..450,457..459) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 766..942 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(784..792,799..801) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1075..1263 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1090..1098,1105..1107) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1462..1650 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1477..1485,1492..1494) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1687..1878 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1705..1713,1720..1722) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1942..4050 /gene="ATP7B" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(2935..2937,2941..2943,3979..3981) /gene="ATP7B" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3067..3075,3277..3279,3430..3438,3526..3528, 3646..3654,3712..3714,3721..3723,3730..3732,3787..3789, 3796..3798) /gene="ATP7B" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
cgagccctgtacaaattgaaaaattgtgagctgttgctaatcttatctaagctttctttgcctacccgtgcctgggaaccagcaatgaagaagagttttgcttttgacaatgttggctacgaaggtggtctggatggcctgggcccttcttctcaggtggacaccagcacaatcaggatcttgggcatgacttgccagtcatgtgtgaagtccattgaggacagaatttccagtttgaaaggcatcgtgagcatgaaggtttccctggaacaaggcagtgccactgtgaaatatgtaccatcagttgtgagcctgcaacaggtttgccatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtggagggcatgacctgtcagtcctgtgttggctccattgaaggcaaggtcgggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggctgtcatcacttatcagccttatctcattcagcctgaagacctcagggaccatgtaaatgacatgggatttgaagctgccatcaagaacaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcactaacccaaagagacctttatcttctgctaaccagaattttaataattctgagaccttgggacaccaaggaaggaatgtggtcaccctccaactgagaatagatggaatgcactgtaaatcttgtgtcttgaatattgaagaaaatattggccaactcctaggggttcaaagtattcaagtgtccttggagaacaaaactgcccaagtacagtatgacccttcttgtaccagcccagtggctctgcagatggctatcgaggcacttccacctgggaactttaaagtttctcttcctgatgcagccgaagggagtgggatagatcacaggtcttccagttctcattcccttggctcctccccaagaaaccaggtgcagagcacatgcagtaccactctgattgccattgctggtatgacctgtgcatcctgtgtccataccattgaaggcatgatctcccaactggaaggggtgcagcaaatatcggtgtctttggccgaagggactggaacagttctttataatccctctgtaattagcccagaagaactcagagctgctatagaagacatgggatttgaggcttcagtcgtttctgaaaactgttctactaaccctcttggaaaccacagtgctgggaattccatggtgcaaactataggtggtacacctacatctgtgcaggaggtggctccccacgctgggaggctccctacaaaccatgtcccagacatctgggcaaagtccccacaatcaaccagagcagtggcaccgcagaagtgcttcttacagatcaaaggcatgacctgtgcgtcctgtgtgtccaacatagaaaggaatctgcagaaggaagctggtgttctctccgtgttggttgccttgatggcgggaaaggcagaggtcaaatatgacccggaggtcattcagccgctcgagatagctcagttgatccaggacctgggctttgaggcagcagtcatggaggactccgcaggctccgatggcaacattgagctgacaatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacaaatggaatcacgtatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgacccggaaattattggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtctttcctgtgcagcctggtgtttggcatccctgtcatggccttaatgatctatatgctgatacccagcaacgagccccaccagtctatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcttgtgtacctttgtccaggtcctcggcgggtggtacttctatgttcaggcctacaaatctctgagacacaggtcagccaacatggacgtgctcatcgtcctggccacgagcattgcttacgtctattctctggtcatcctggtggttgctgtggccgagaaggcggagaggagccctgtgacattcttcgacacgcccccgatgctcttcgtgttcattgccctggggcggtggctggaacacttggcaaagagcaaaacctcagaagccctggctaaactcatgtctctccaagccacagaagccactgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggttgtccctgggggaaagttcccagtggacgggaaagtcctggaaggcaataccatggctgatgagtccctcatcacaggagaagccatgccagtcactaagaaacctggaagcactgtaattgcggggtctataaatgcacatggctctgtgctcattaaagccacccacgtgggcaatgacaccactttggctcagattgtgaaactggtggaagaggctcagatgtcaaaggcccccattcagcaactggctgaccggtttagtggatattttgtcccgcttatcatcatcatgtcaactttgacgttggtggtatggattgtaatcggttttatcgattttggtgttgttcagaagtactttcctaaccccagcaagcacatctcccagacagaggtgatcatccggtttgcattccagacgtccatcacggtgctatgcattgcctgcccctgctccctggggctggccacgcccacggccgtcatggtgggcactggggtggccgcgcagaatggcatcctcatcaagggaggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggggtccccagggtcatgcgagtgctcctactgggggatgtagccaccctgcccctcaggaaggttctggctgtggtggggactgcggaggccagcagcgaacaccccttgggcgtggcagtcaccaaatactgtaaagaggaacttggaacagagaccttgggatactgcacggacttccaggcggtgccaggctgtggaattgggtgcaaagtcagcaacgtggaaggcatcctggcccacagtgagcgccctttgagtgcacctgccagtcacctgaatgaggctggcaaccttcctgcagaaaaagatgcagccccccagaccttctctgtgctgattggaaaccgtgaatggctgaggcgcaacggcttaaccatttccagtgacgtcagtgacgctatgacagaccacgagatgaaaggacagacagccatcctggtggctattgacggtgtgctctgtgggatgattgctatcgcagacgctgtcaagcaggaggccgcactggctgtgcacacgctgcaaagcatgggtgtggacgtggttctgatcactggggacaaccggaagacagccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcgcacaaggtggccaaggtccaggagctccagaatgaagggaagagagtcgccatggtgggggatgggatcaatgactccccagccttggctcaggcagacatgggtgtcgccattggcaccggcacggatgtggccatcgaggcagccgacgtcgtcctcatcagaaatgatttgctggatgtggtggctagcattcacctttccaagaggattgtccggaggatacgcatcaacctggtcttggcactgatttataacctggttgggatacccatcgcggcaggtgtcttcatgcccatcggcattgtgctgcagccctggatgggctcagcggccatggccgcctcctctgtgtctgtggtgctgtcatccctgcagctcaagtgctataagaagcctgacctggagaggtatgaggcacaggcacatggccacatgaagcccctgacagcatcccaggtcagtgtgcacatcggcatggatgacaggcggcgggactcccccagggccacaccatgggaccaggtcagctatgtcagccaggtgtcgctgtcctccctgacatctgacaagccatctcggcacagcactgcagcggacgatggtggggacaagtggtctctgctcctgaatgacagggatgaggagcagtacatctgatggcaccaggcaggcgggccagggcagggacttgcctccacttgccacaagctgagcaggacagccaacagcaggatgggctgagctagcctccagctttggggacttccactccctggatatatccagtcatcctgccctgcagcacatggccttgtctgagtgcaactggccttgccctagagaggacggcctggcctgcctcttggcctcactgaaccatcagcatgggctttgtcttggactctagtccttggctgtattgtagaaggtgagagacgagtcaccctcctcacaaacctctgcttggagtatttaggatgactgctgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaactgcagacctcactatcaggctctttctgatgacgcctgtctgtgtgcatcatgtttctgagaccgcagtttacctcaggtgtgcctgttgctttcttcctgcacagtctgttccttttctctcctgtgtgcttgtccgtggggaccccttggaaccctgcccttcacctaggagggcgagaccaatgtccttgtggtccttgctgctgctctcaggcgcttctccagtgctctggagtgtgcatttcagcttgaacctgcttcctggctcgcacatccccagccagggagcttgccacaccattcttcaggccgaggagagttctttttttgtttaaagtccccttctccatggagtggtggcttctcagtagagtgttgttgctgaccagctggagtgagggtctcagagcctgacctgagagtccagacttggcttcctgtggggtctaggttctcacaattcaggacgtccttccatatccctgcccagcctgtggtgctcaaaacgtttgtcccatgggagacgtgtgtgtgcaggagcctccctgcatggccgcaggagcttcgttttcagtcttctgtgtgactgtcacctcgtggggttcaatagagaattcatgtcactagcacctggccttgtgtggcttggagagtaggtactccccaaataggaggaaagcacagcctccttgagcctgccttctgcatgcacccaggggcttcaggaaaggagtggccacagcatcccgaagggagcatctgtttacctggcagtggctctcagagcagcagaaggggtccagttttagactctgaagttggttgtgattgatagaaccccttgggagcaaactagtagagttggattaaattctgggtgaaaccctttgcttccacacaaaatagttttagtgacttttttcagtgtctattacttgccaggggcagttttagcagcactttcgatagattacctctaatcttcccaaccaaccaacaaggtagctattactgtccgcattttacaggcaaggaaacaggctccaagaggctgagggctttgcccaggatgacatagccagtggacaagccgtgtctgtcagctgtgaaggcttcactctaattgtccttctaccttgaacagaagttttcctgataagaataaacaaggaaaaggtccttgcctcctggaagaacaaatctaccaggtgatctattcattgtttcaactcagaatgcaattcattcgggaggtcatctgaccttcaccttgaatggttagtttcactttttacatatagtttttgcaggattttataaaatccaagcgccccggtgattgtgttttcattgttttcagccccccaactccagcccgcagcacatttccgctatccgtcagtaactgtatcctctctttatgcttgcttggggaatgttgttttctgactaggctgatcattatctaaagaatctaattctgttcatttttaaaacttttaggaccataaacattgtgttcctatatggacatggaaatatttatataattttatagaaaataaccttttagatggtcaaagtgtaaggaatttttttgtcagataaccatttctacttcaaaaacatttcatgcattattagaataaagttcttgtcattcctct
//
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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