GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 14:56:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_017858274            6476 bp    mRNA    linear   PRI 24-AUG-2016
DEFINITION  PREDICTED: Rhinopithecus bieti ATPase copper transporting beta
            (ATP7B), transcript variant X3, mRNA.
ACCESSION   XM_017858274
VERSION     XM_017858274.1
DBLINK      BioProject: PRJNA339282
KEYWORDS    RefSeq.
SOURCE      Rhinopithecus bieti (black snub-nosed monkey)
  ORGANISM  Rhinopithecus bieti
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016819110.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Rhinopithecus bieti Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6476
                     /organism="Rhinopithecus bieti"
                     /mol_type="mRNA"
                     /isolate="Rb0"
                     /db_xref="taxon:61621"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="blood"
     gene            1..6476
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 97 ESTs, 6 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:108519344"
     CDS             118..4419
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X3"
                     /protein_id="XP_017713763.1"
                     /db_xref="GeneID:108519344"
                     /translation="
MKKSFAFDNVGYEGGLDGLGPSSQVDTSTIRILGMTCQSCVKSIEDRISSLKGIVSMKVSLEQGSATVKYVPSVVSLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVGSIEGKVGKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKNKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNNSETLGHQGRNVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVQYDPSCTSPVALQMAIEALPPGNFKVSLPDAAEGSGIDHRSSSSHSLGSSPRNQVQSTCSTTLIAIAGMTCASCVHTIEGMISQLEGVQQISVSLAEGTGTVLYNPSVISPEELRAAIEDMGFEASVVSENCSTNPLGNHSAGNSMVQTIGGTPTSVQEVAPHAGRLPTNHVPDIWAKSPQSTRAVAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEVKYDPEVIQPLEIAQLIQDLGFEAAVMEDSAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHQSMVLDHNIIPGLSILNLIFFILCTFVQVLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHLAKSKTSEALAKLMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPLIIIMSTLTLVVWIVIGFIDFGVVQKYFPNPSKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGNLPAEKDAAPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKRVAMVGDGINDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRIVRRIRINLVLALIYNLVGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQAHGHMKPLTASQVSVHIGMDDRRRDSPRATPWDQVSYVSQVSLSSLTSDKPSRHSTAADDGGDKWSLLLNDRDEEQYI"
     misc_feature    202..393
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(220..228,235..237)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    457..648
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(475..483,490..492)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    799..975
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(817..825,832..834)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1108..1296
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1123..1131,1138..1140)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1495..1683
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1510..1518,1525..1527)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1720..1911
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1738..1746,1753..1755)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1975..4083
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(2968..2970,2974..2976,4012..4014)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3100..3108,3310..3312,3463..3471,3559..3561,
                     3679..3687,3745..3747,3754..3756,3763..3765,3820..3822,
                     3829..3831)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
ORIGIN      
gatactagtgggtgaagccagggctcaggcagctcagctctcttgcgtgttagtctggcttgctgcttgcagatcttatctaagctttctttgcctacccgtgcctgggaaccagcaatgaagaagagttttgcttttgacaatgttggctacgaaggtggtctggatggcctgggcccttcttctcaggtggacaccagcacaatcaggatcttgggcatgacttgccagtcatgtgtgaagtccattgaggacagaatttccagtttgaaaggcatcgtgagcatgaaggtttccctggaacaaggcagtgccactgtgaaatatgtaccatcagttgtgagcctgcaacaggtttgccatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtggagggcatgacctgtcagtcctgtgttggctccattgaaggcaaggtcgggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggctgtcatcacttatcagccttatctcattcagcctgaagacctcagggaccatgtaaatgacatgggatttgaagctgccatcaagaacaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcactaacccaaagagacctttatcttctgctaaccagaattttaataattctgagaccttgggacaccaaggaaggaatgtggtcaccctccaactgagaatagatggaatgcactgtaaatcttgtgtcttgaatattgaagaaaatattggccaactcctaggggttcaaagtattcaagtgtccttggagaacaaaactgcccaagtacagtatgacccttcttgtaccagcccagtggctctgcagatggctatcgaggcacttccacctgggaactttaaagtttctcttcctgatgcagccgaagggagtgggatagatcacaggtcttccagttctcattcccttggctcctccccaagaaaccaggtgcagagcacatgcagtaccactctgattgccattgctggtatgacctgtgcatcctgtgtccataccattgaaggcatgatctcccaactggaaggggtgcagcaaatatcggtgtctttggccgaagggactggaacagttctttataatccctctgtaattagcccagaagaactcagagctgctatagaagacatgggatttgaggcttcagtcgtttctgaaaactgttctactaaccctcttggaaaccacagtgctgggaattccatggtgcaaactataggtggtacacctacatctgtgcaggaggtggctccccacgctgggaggctccctacaaaccatgtcccagacatctgggcaaagtccccacaatcaaccagagcagtggcaccgcagaagtgcttcttacagatcaaaggcatgacctgtgcgtcctgtgtgtccaacatagaaaggaatctgcagaaggaagctggtgttctctccgtgttggttgccttgatggcgggaaaggcagaggtcaaatatgacccggaggtcattcagccgctcgagatagctcagttgatccaggacctgggctttgaggcagcagtcatggaggactccgcaggctccgatggcaacattgagctgacaatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacaaatggaatcacgtatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgacccggaaattattggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtctttcctgtgcagcctggtgtttggcatccctgtcatggccttaatgatctatatgctgatacccagcaacgagccccaccagtctatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcttgtgtacctttgtccaggtcctcggcgggtggtacttctatgttcaggcctacaaatctctgagacacaggtcagccaacatggacgtgctcatcgtcctggccacgagcattgcttacgtctattctctggtcatcctggtggttgctgtggccgagaaggcggagaggagccctgtgacattcttcgacacgcccccgatgctcttcgtgttcattgccctggggcggtggctggaacacttggcaaagagcaaaacctcagaagccctggctaaactcatgtctctccaagccacagaagccactgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggttgtccctgggggaaagttcccagtggacgggaaagtcctggaaggcaataccatggctgatgagtccctcatcacaggagaagccatgccagtcactaagaaacctggaagcactgtaattgcggggtctataaatgcacatggctctgtgctcattaaagccacccacgtgggcaatgacaccactttggctcagattgtgaaactggtggaagaggctcagatgtcaaaggcccccattcagcaactggctgaccggtttagtggatattttgtcccgcttatcatcatcatgtcaactttgacgttggtggtatggattgtaatcggttttatcgattttggtgttgttcagaagtactttcctaaccccagcaagcacatctcccagacagaggtgatcatccggtttgcattccagacgtccatcacggtgctatgcattgcctgcccctgctccctggggctggccacgcccacggccgtcatggtgggcactggggtggccgcgcagaatggcatcctcatcaagggaggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggggtccccagggtcatgcgagtgctcctactgggggatgtagccaccctgcccctcaggaaggttctggctgtggtggggactgcggaggccagcagcgaacaccccttgggcgtggcagtcaccaaatactgtaaagaggaacttggaacagagaccttgggatactgcacggacttccaggcggtgccaggctgtggaattgggtgcaaagtcagcaacgtggaaggcatcctggcccacagtgagcgccctttgagtgcacctgccagtcacctgaatgaggctggcaaccttcctgcagaaaaagatgcagccccccagaccttctctgtgctgattggaaaccgtgaatggctgaggcgcaacggcttaaccatttccagtgacgtcagtgacgctatgacagaccacgagatgaaaggacagacagccatcctggtggctattgacggtgtgctctgtgggatgattgctatcgcagacgctgtcaagcaggaggccgcactggctgtgcacacgctgcaaagcatgggtgtggacgtggttctgatcactggggacaaccggaagacagccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcgcacaaggtggccaaggtccaggagctccagaatgaagggaagagagtcgccatggtgggggatgggatcaatgactccccagccttggctcaggcagacatgggtgtcgccattggcaccggcacggatgtggccatcgaggcagccgacgtcgtcctcatcagaaatgatttgctggatgtggtggctagcattcacctttccaagaggattgtccggaggatacgcatcaacctggtcttggcactgatttataacctggttgggatacccatcgcggcaggtgtcttcatgcccatcggcattgtgctgcagccctggatgggctcagcggccatggccgcctcctctgtgtctgtggtgctgtcatccctgcagctcaagtgctataagaagcctgacctggagaggtatgaggcacaggcacatggccacatgaagcccctgacagcatcccaggtcagtgtgcacatcggcatggatgacaggcggcgggactcccccagggccacaccatgggaccaggtcagctatgtcagccaggtgtcgctgtcctccctgacatctgacaagccatctcggcacagcactgcagcggacgatggtggggacaagtggtctctgctcctgaatgacagggatgaggagcagtacatctgatggcaccaggcaggcgggccagggcagggacttgcctccacttgccacaagctgagcaggacagccaacagcaggatgggctgagctagcctccagctttggggacttccactccctggatatatccagtcatcctgccctgcagcacatggccttgtctgagtgcaactggccttgccctagagaggacggcctggcctgcctcttggcctcactgaaccatcagcatgggctttgtcttggactctagtccttggctgtattgtagaaggtgagagacgagtcaccctcctcacaaacctctgcttggagtatttaggatgactgctgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaactgcagacctcactatcaggctctttctgatgacgcctgtctgtgtgcatcatgtttctgagaccgcagtttacctcaggtgtgcctgttgctttcttcctgcacagtctgttccttttctctcctgtgtgcttgtccgtggggaccccttggaaccctgcccttcacctaggagggcgagaccaatgtccttgtggtccttgctgctgctctcaggcgcttctccagtgctctggagtgtgcatttcagcttgaacctgcttcctggctcgcacatccccagccagggagcttgccacaccattcttcaggccgaggagagttctttttttgtttaaagtccccttctccatggagtggtggcttctcagtagagtgttgttgctgaccagctggagtgagggtctcagagcctgacctgagagtccagacttggcttcctgtggggtctaggttctcacaattcaggacgtccttccatatccctgcccagcctgtggtgctcaaaacgtttgtcccatgggagacgtgtgtgtgcaggagcctccctgcatggccgcaggagcttcgttttcagtcttctgtgtgactgtcacctcgtggggttcaatagagaattcatgtcactagcacctggccttgtgtggcttggagagtaggtactccccaaataggaggaaagcacagcctccttgagcctgccttctgcatgcacccaggggcttcaggaaaggagtggccacagcatcccgaagggagcatctgtttacctggcagtggctctcagagcagcagaaggggtccagttttagactctgaagttggttgtgattgatagaaccccttgggagcaaactagtagagttggattaaattctgggtgaaaccctttgcttccacacaaaatagttttagtgacttttttcagtgtctattacttgccaggggcagttttagcagcactttcgatagattacctctaatcttcccaaccaaccaacaaggtagctattactgtccgcattttacaggcaaggaaacaggctccaagaggctgagggctttgcccaggatgacatagccagtggacaagccgtgtctgtcagctgtgaaggcttcactctaattgtccttctaccttgaacagaagttttcctgataagaataaacaaggaaaaggtccttgcctcctggaagaacaaatctaccaggtgatctattcattgtttcaactcagaatgcaattcattcgggaggtcatctgaccttcaccttgaatggttagtttcactttttacatatagtttttgcaggattttataaaatccaagcgccccggtgattgtgttttcattgttttcagccccccaactccagcccgcagcacatttccgctatccgtcagtaactgtatcctctctttatgcttgcttggggaatgttgttttctgactaggctgatcattatctaaagaatctaattctgttcatttttaaaacttttaggaccataaacattgtgttcctatatggacatggaaatatttatataattttatagaaaataaccttttagatggtcaaagtgtaaggaatttttttgtcagataaccatttctacttcaaaaacatttcatgcattattagaataaagttcttgtcattcctct
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]