LOCUS       XM_017828282            6747 bp    mRNA    linear   VRT 11-AUG-2016
DEFINITION  PREDICTED: Lepidothrix coronata argonaute 1, RISC catalytic
            component (AGO1), mRNA.
ACCESSION   XM_017828282
VERSION     XM_017828282.1
DBLINK      BioProject: PRJNA338288
KEYWORDS    RefSeq.
SOURCE      Lepidothrix coronata (blue-crowned manakin)
  ORGANISM  Lepidothrix coronata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae;
            Lepidothrix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016690327.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Lepidothrix coronata Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6747
                     /organism="Lepidothrix coronata"
                     /mol_type="mRNA"
                     /isolate="B3197"
                     /specimen_voucher="LSUMZ:110521"
                     /db_xref="taxon:321398"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
                     /country="Peru: Loreto Department, 1.5 km S Libertad, S.
                     bank Rio Napo, 80 km N Iquitos"
     gene            1..6747
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 ESTs, 43 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:108503872"
     CDS             73..2646
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1"
                     /protein_id="XP_017683771.1"
                     /db_xref="GeneID:108503872"
                     /translation="

MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"

     misc_feature    172..564
                     /gene="AGO1"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    592..744
                     /gene="AGO1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    745..1107
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(901..903,946..948,988..990,1000..1002,1054..1056,
                     1075..1077,1081..1083)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1240..2517
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1651..1653,1663..1665,1699..1710,1717..1719,
                     1741..1743,1750..1752,1762..1764,1774..1776)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1855..1857,1861..1863,2071..2073,2485..2487)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

gccccggccctgcccggccccggcacggccctgccccggcccccggctcggagcgccgcccgcgtggatgggatggaagcgggaccctcgggagcagctgcaggcgcatacctgccccccctgcagcaggtgtttcaagcgccgcggcggcccgggataggaaccgtcgggaagcccatcaagctcttggccaactactttgaagtggacattcccaagatcgatgtgtatcattatgaagtggatatcaagcccgacaaatgtccacgcagagtcaacagggaagttgtggagtacatggtgcagcacttcaaaccgcaaatctttggcgaccgaaaaccagtctatgatgggaagaagaacatctacactgtcacagccttgcccattgggaatgagcgggttgactttgaggtgacgatcccgggggaaggcaaggacaggatatttaaggtctccatcaaatggatggccatcgtgagctggcgcatgctgcacgaggccctggtcagcgggcagatccccgtccccctggagtccgtccaggcgctggatgttgccatgaggcacctggcttccatgaggtacactcctgtcggccgctccttcttctccccccccgaaggctactaccaccccctgggagggggcagggaggtctggttcggcttccaccagtcagtccggcctgccatgtggaagatgatgctcaacatcgatgtgtcggccaccgccttctacaaggcccagcctgtcatcgagttcatgtgcgaggtgctggacatccgtaacatcgacgagcagcccaagcccctgacggactcacagagagtgcgtttcaccaaggagatcaaaggtctgaaggtggaggtgacccactgtgggcagatgaagaggaaataccgcgtgtgtaacgttacccggcggccggccagccaccagacgttccctctgcagctggagagcggtcagactgtggagtgcacagtggctcagtactttaagcagaaatacaacctgcagctgaaatacccccacctgccctgtctccaggttggccaggagcagaaacacacgtacctgcccttggaggtgtgtaacatcgtggctggccagcggtgcatcaagaagctcacggacaatcaaacgtcaaccatgataaaagcaacagccaggtctgccccagacaggcaggaggaaatcagtcgcctgatgaagaatgccagctacaacctggatccgtacattcaggagtttgggatcaaggtgaaggatgacatgacggaggtgacggggcgggtcctgccggcgcccatcctgcagtatggaggccggaaccgggccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggccattgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacagaccagctgcgcaagatctccaaggacgccgggatgcccatccagggccagccctgcttctgcaagtatgcccagggtgcagacagtgtggagcccatgttccgacacctcaagaacacctattcgggccttcagctcatcattgtcatcctgccagggaagacgccggtgtacgctgaggtgaagcgtgttggggacactctcctgggaatggccacgcagtgtgtccaggtcaagaacgtggtgaaaacctccccacagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccagcgctctgctgtctttcagcagccggtgatcttccttggggccgatgtcactcacccaccggcaggagatgggaagaaaccctccataacagctgtcgtgggcagcatggacgcccaccccagccggtactgtgccacggtgcgcgtgcagcgcccgcgccaggaaatcatcgaggacctgtcctacatggtgagggagctcctcatccagttctacaaatccacccgcttcaaacccaccaggatcatcttctaccgcgatggtgttcccgaggggcagctcccacagatccttcactatgagctcctggcgatccgagacgcctgcatcaaactggaaaaagattaccagcctggcatcacctacatcgtcgtccagaagaggcatcacacccgtctcttctgtgcagacaagaacgagaggattgggaagagcgggaacatcccagcaggaacaacagtggatacaaacatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggcacgagccggccatcccactactacgtgctgtgggatgacaaccggttcacggcggacgagctgcagatcctcacgtaccagctgtgccacacctacgtgcgctgcacccgctccgtgtccatcccagccccagcctactatgcccggctggtggcattccgggccaggtaccacctcgtggacaaggagcacgacagcggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgttttttttttccaatgagaaatcactgcagggcaggcagcgtcgactcgaggcaggagaccagcaccacgggacagaaggatccaacacctgtgtcggattggaagaaagagactgatgatgatgatgatgatgatgatgatgatgatgatgattatttttttagttttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaagggaagggataaaactcccgggaggcggaagcaggttttcatttttaagatgcaatactagagactcctgactgtgaactggcggctttggtcctccgttgcccaccaggcgctggtaggtattttttgtgggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagattatgagatgctttaatgggttaagggggaaaaaaaaaaccaactagtttataggagaattctaacactaacagttccccgcccccgagtaattccccccggataatgtaaggcaccctagcacttagctcagaactgaaaactgtcttcctcgtgttacaagctagtcagctgctgccgctcgaagcaacagtcacagactattccatgggtgagtgccttactatgatgctgcaaaatttcaatgtttttaatcttgtaaggaaactagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttctatggtcctcagttgcagtttgtgtcagatcacgacctcacggtggttaaaccccattgaaagatgtgcactttcatacaggacacatttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgttctgacaaatgggggcatctccatcccatgaggagagaaagcactatccattttttctttctttttttttttttcttccccccctgaatttttacgatgggacaccgggatttttttactagacattatttttatatgatactgagtctgttgccaaaatccacaagtcattaacattctcagagtttacatccccgcacttcctgaggctgtgtgctcatgccagagctttccagcgtttcctgtccgatgagtgttgctgcctgcagcccgttccgtgccgggtgctccgcagtgcccgtggtccctgtgcatccagcatgtgtctgcccgggctggctgctttccaactaccacatcccccacctccagcacctcccggctcactctctctgctgctcagttttgctgctctttgtgtcgtagtatcactgctctcatgcccagggttttgattctgaaagcacaccagatcattccttagaatgatgaaacccttgttgttgtcacgggggaaactcctgatttgtgtgtgtagcaggaaaacagcctttttccccgcaggaacctggtcactgcttttcaggcccgttttgctgcgcagcgaccgcacgcacggcggcggggccgtggggcagctcagtactcatatcatccgggcagattatctggggtttttgagatgaaagtgctcccagcgcctccttcaagggacgaacgaggcgcacgctctgcggggaagagctctggtctcattttcctgcccgacgcgtgtcccaggcagccccgcgcgagcgctgccccggcccgcgcgcggacaggagcacatccacacctctttggtttgtactttctgacgcggaaacttgccttgccttcacgagaaacacaccggtcatgttggcctattgagctgtcctaaccctgggaattcactcttcccgttttcttttggggcaacgtgtttgtgaacagtgaagacatcactatgctatgcaaactaagtgctgagcccactgatgtcacgtttggtgaagatcctacgtttagcacagtcctatttttcctcaagaccacagtgtttggttcatattctcctttgcaccttgtgtcaacctccactgctgtatatcctcaaggtgacgaggaggagaccaggaactatccgtggtcagtaggtagggaactcttaggaaggcttttagagcgtagggaacgcatcaacactaagtgtcaacatgagaagcctgcattcctctacacaagtgcctgcatagtgacaccaatcagcacctccatctcatcctccgaactctggcttgtgttcattgaaagcaaaacgatctcagaggggctgttcccgctcacctggtggtagaaagcttctcattaagaataaaatcggggtcaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaccggaacgcgcctggctgctgctctgcagcgaggggcaaagggattttggttcctcgtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggtatttacagaaacagcttgttgctctgtaacaattttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcgtgttctgcccttatttcaccctctgcgttgggttttcatggttttggataaataaaaaaagccaaactcagtagctgctgtgccctttaaacccagtttccactttgaagaactttagagaggttggagtgacccgcatgttttctgtaccggactatgcaccgtgccctctccgtgctccggcaccggcatttcccccttctcttgtccgagatgcaaacgagtagctgcatgtggaggtgcgttttgctgccgtaggcgataggtgttacccaggtacatgccaggactgtagttagccacaacccccacacggacatcccgatgggctcccagcctctgccttctccgtgcgcacgagctcgtctgcgactggaagcgtcgccgggtgcatgcagttctgtgggaagaggagtggctttcatgtgcccgttgaatgctgttgttccccttatctcatatctggacagaacggggcgggaggtctgctctgccctctccccgcagctccagggcggtcggggtgttctgggatcgcacgtgtccgacccgatgtctcagtgtcacccagcgttgcctcgcggaaggttttcttcttggaaaatcagtgtgaaataaaaagaatgtgattgtttcaggaagggaagccagacagcaggagagcaataaacaagtgaaattcatatcttgcctgagtgatttgcacttcaatagttgtgaaagaaaatttccaggactccagtgcttttgtgtttgatttccagcccctttcgtacctcctttctacgagcaagtgtgggactgtacatagggtgtttacaggatgctccctttgggttgttacttttcttgtgggttttttttgctctagcttgaactctgtatggtccatttgttaaatatccgtgaacagctgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcttatattttaaaggttgaatatcaggttttttttgtatgtgtggaattaagactggtaaagagaaacaaaatccttggattaggccaaaagaaaatactgtaagatcataaccacctctttattaaagaaagcagtatgattaaagagctccggaacattgtatttatattggatttgatttaattgcctttgtggattttatttttttttttgccttggtcctgatttttacttgcaacttcgactttgcagtcccaagtgtctgttacctgtaactgttggcagaagacctaaataaaagcaatgtgaatatgtcggggtgaca

//