LOCUS       XM_017814885            9091 bp    mRNA    linear   VRT 11-AUG-2016
DEFINITION  PREDICTED: Lepidothrix coronata lymphocyte activating 3 (LAG3),
            transcript variant X2, mRNA.
ACCESSION   XM_017814885
VERSION     XM_017814885.1
DBLINK      BioProject: PRJNA338288
KEYWORDS    RefSeq.
SOURCE      Lepidothrix coronata (blue-crowned manakin)
  ORGANISM  Lepidothrix coronata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Lepidothrix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016690226.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Lepidothrix coronata Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9091
                     /organism="Lepidothrix coronata"
                     /mol_type="mRNA"
                     /isolate="B3197"
                     /specimen_voucher="LSUMZ:110521"
                     /db_xref="taxon:321398"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
                     /geo_loc_name="Peru: Loreto Department, 1.5 km S Libertad,
                     S. bank Rio Napo, 80 km N Iquitos"
     gene            1..9091
                     /gene="LAG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:108497339"
     CDS             7063..8583
                     /gene="LAG3"
                     /codon_start=1
                     /product="lymphocyte activation gene 3 protein isoform X1"
                     /protein_id="XP_017670374.1"
                     /db_xref="GeneID:108497339"
                     /translation="

MRLMSLVLFLTFVLLAFSAGHILAGLAEGESRDQKMWVREGSSAVLPCHLSPRKTRKSLKQLPDKISVQWKRHGGSVHQESHGVLEVGYSGLQKTALLMKPRVSLQDSALHNGNFSLRIDPVRSEDAGLYEARVEYNSEVHSCHVELGVITVTLSPPNPVEENEPLLMSCNSSYQASLVEICWFHNGHLGPTSRTFCSLSGALSILRPAMSDAGSWRCQLRYSDNEIISATYNLQILGFDGPTNPVVYAAAGSAAHLPCSLSYLPSSFQMNMVTAHWSHLAGGHLQDWDIFPNLSNRSFPLHLPVVGPRDAGQYRCAVSVGHKTISREVTLAVVTVTPSIQGPVSEGSRLLLICSLTHSRGHERFQWKHLGSVPTKSKLAVATLQNLEGSSAQMGPILKIPKVSQKDTGTWECSVYGPEGQLGGVEYKLQITSAQVSSPPAMFSGQVTFGLTLTLFLLLAVCVVALALQKRAQTPAFSALEGMIGVPGPRKSMKENQKGKIQQTEC"

     misc_feature    7162..7503
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    7192..7206
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    7261..7275
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    7405..7419
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    7447..7464
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    7516..7731
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    7558..7572
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    7600..7614
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    7645..7677
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    7705..7722
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    7795..8061
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    7825..7839
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    7882..7896
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    7999..8016
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8059..8307
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      

catgggaagaaaacatcaaagatggattgtaagagcataaaaatggtcgtaccaatggtctctctatggtgctctgctatggccaatacaagatccctaaggaaaggcattgagaatcaaggcatcatgtagaagcttcctgcaagcaagagtcaaggacagcctgagctggcagtcataccagttcatcacattcaaaagccagtgaggaactgatcctccacaaattacctaatctgtatttgaactcatttatattcctgctctccataacatcctaacatcctctaacaataattacactgtctttgggacatgcaaaatgaatttcctcttgtttgcagtaaaattgctgcctgagctcaccactgtttccttcagattaggtaaaagagatcaagcatctcaagtttattcatttcaaagcaagatcttcaggctcccaagtcagagttggtttggttttatttttgtaccactctgctaaatccttttcccacatccattttcaatatatggacacattccagtaacttgtgctgtaaacagaggtaacgcaatctgttcactccgtgagatcccatttaatacagcatgcatcatctatctccctccctggagccttgtcttcccaggatactgtattatgttgcggaagtgtgattccacatactttgttcctccatgtagaaccttatgttttaattctaagcgtgattttaccaggggttttaggaggtagttacttcccattaactcggccaaatatatgcaccgtgccaggagagacagtcacacctgcagagctgtgtagccctcctaaccatattttgtcattgtaagacatccatgaacatcagaaagcatttagatgttgagcagatcatgtgacagcctagcactggaagctcacatagtctgaatttctaggacactttcatctcatcagcaaagcgtctgaagtatttacgcaggacacaaaagcattagctgctttatcttctactctcacacatgctgtgcagctaaagagagtcctttggtcttttgtggctttctgagaaaaacctggcagagaagcctgtaagagtggagagagctctgtgcagcatgaaatgttcaccttctgtagaatgggacctgacacctgcaaacagaaacttcttagcaccagagaaaattatcaatggcaccaaacaaacaaaaaaaatcaagcttaaacccatgttttctgcatgtgacctcaattgcaccacagtgaccagctcccggcagaacctcctaatatttagttgtctctccgtcttgggaaaccagacctctcccagccctccttgtgacacaggaggtcccaccccttcttgggaattttgaagtccatttatagttccatctctttggtcccagcctcctttgagggtaaggaagatttagatcttacaccaagaaagcatgctgtgtgtgccagcacagtgagaatgggggtagctccagagccagaggggtctctttgcagtactaaaggcaagaacacagcaagcagtgattatccattattggaagtgttcaggattttcctgaacctggccctgagcaaccctgtctagtttgagagtcactctgctgggagcagaggggtgaaatagagaccccagaggtcctttcccacctgaatcttcctgtgatactgtgactaacaaacaagtgggtttatttgatttcgtggtgtttttcttagtgaggcagtagaagatatcttacaaaaggatgcaggctgctacctgccatgaggtgccaagtggagaggaaattgaaaaaacagctcagttgccactacattctgaattgcagtctggcacacaatcgtgttaatccagcacaaatgcatagtgttgcagagaggggcaatcccatcttccctttcatctctcctgctgcctctcttttgtcaacactgatgagcagcagagaattgatccagctgaaaactaaactataaaggaataaatccattttgatttacaatgagccctttcagtttaaaaatgcaccatctccctccctagcaattttttgttcaaagtaaagtggttggggatcaccaaatcagagacttcattctcttcaggactattctggagcactgctgtgcccctccttgctatgccatcatccacagcaactttcccagtgattatattcttctgcaaatgatttttcgtagcatcactgctcctttagtcaccctctactttttcgtatctagctttcccactaagaaagaaacaacatattctctatttagcctgcagcctccagggttccaatgtaccatgagatatgggctcctgttctcctgccatgatgcaccatgaaaacacagcatgtggatcagacccactttttcacagttcctggggcacaggcaaatacgcctagagccagacccctctgtgctctgagcaatgctcatcctccagcatctgaaacatgacaaggtgcctcttctctgttggagaaacccaggttactgcccagagtagaacacagagaggatttgagccccatgagcagaaggcacatccttctgtggcagtttttctctgaagggatactgtactgtcagttgagagcaacagcagcaataaggatatgagcctggaatatgtggattggcctttctctcttttatggcactttcagagattttgtttgcttgatatttctgctaatgctcatctgctttctgggctatccctggtgtccagcacttgtatgtcatccagctctgctgtgggcactggaacttccagtccactgggtcccaaggaccctgcagatggtcagactctttctctccaggtaccctgagagaaacacattttgggagtcccactctcagaccaaggttcagctcccatcaaagtactcctcagctcatacctgagttaaggcaatctttcaggaccactcagctgctgccccagcctctcaacaacacgttgggtcagtgcctgactcctttacctcagtgtcaaggtcactgtaactgagagcaaagctggcacgtgcctcccatcccactttgctcttgggaaaacccagtgcagccctgggatatttggaaggctattgcatattttttgattggattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcagaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtaactgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattgggggttttgttatgttttgggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttatttctcactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcactgtaaagaaagaggctgcagatttgtccaaagaccccataaagctatgttttcttaaaggtgctctcatgggattctgggaagcagggcactgctagactctcctcagtgccatatccgagatttgtggtgactcaggcactgcctccctaaaaaggaccctttcaaaaaagcctcccagtcaggtagccaatcactctgcctcctcctagcacttctgcagtggcacattttggtttttcccagatctactgggagatagaaactttctcttttctggtgctcttctcctcactgctttttgggatctgtcatctcagatgaatgggtcccttctccaagaccaccctctgatgagttgacgtgtggtgtacccagcccctggggagataacatgccgcttccaggcatcatgaaacatgtttggtacccaccctggacttaatttcctatacagaatgcacctctggttggcaccttggtagaaactatcatggccctttgtgtgggaaaagtggcttgcattcctctacttcaggggtgcctattttgatgcattaccccattgtgcatctcacagaaagcctgccaagctgtggacaccagctctttctgcctcagagttctgcagctcgacctctctgcagcaagaaggtgttgacttgggaaccactgcatctgtcccaagtgcccagagaacggcagctccactacttcctctctgcagctgagcttagatttcttttagtcccctaagcttcccagtcagtgccagaagtcttgcagttaatcccagtccctgttgcctgtgcaggcacctgttgggtaccaacctgcccagcagctcttgctcacaccacatccttgccaaaccttcccttctgtttccccaggtgtggctgctttttgtttacagttccttgccatgaagttattagttatctcccattaataaggaacttggttttgcctgctatgtttgctttagcactggacaaacagcaatcaggatgttttacacgaggtccttctggcaagcactctatctcaggaacgcccaggcaagctgataactcagtcttcaagcatggtttcctagatcagctgaagtctgaaaataaattctagagcacctgagaacgtcagcataaagtggaagattgtgactactttcagatttgatggtgcaaggaccaaaacatgaaagtggaatcattcagagaaaaacacggtattacagaaatctggaaatgcagtggaaaattccttcagcaagactaactcaatgatactgcagaacagtgttttctattcctatttttcttggtgagtgcagtttgcatccataagacatgccaagagagacaagaagagcaatgtattaaggctgtgcacaagacgactgctgcggtgaagtccggaacctggctgaagctactaatgcctaacatggacaaaggagcatttagtgagctgggcttctacgtccctgcccttggctactcttgttgcagcctgcccctcattccccatggctctgccagggtcccacacatccctgtcagcctctctgcccaggggacccacacgggcagttctgagaagatgtccctgtgctgatctctctctggtcactgttatctctgcctcggggtcccattctgggagatgacgaaaatgctattcgagggagtcagcatttaaaatgggccgttagagagaaacgtcacagtgtctttgctaaagatagcctggtgctgagtaaaacagtgcctctaaaaccttccttttacaacatgctcactcagcataataacccctcggcctcaaacaccctcaaacacccaggcagctcctgtcattttcctgggctctccatcagtctcttgtgaccacctcttgggaagctgtagcagaatgggactacgtcctctgctttgctgagtcttacaagggataagcatttcctagagcatgaattcctttaaaagtggttttgagggctagagtggaatagtgccagggtgccaaggctacaagagcagagagagttgagatggagggagagagtaatgaactcagtgtgtccctcaagtgaagccaggagagggggagcagatgatgctggactgcagcaatgtatgtgtctccccaccacggttccaactcccttctctctctctctcaccttcacccacacactcacaccattcttgcactgctgattcaagggaaagaagcggttgatgctttctgcttgaactggtcaccacaaactgtttttcttgaacagtaggaaaaaaacacctcctgacaactgttgcaagttctcccctatctttgctcctctctttctctctcatgcgatcccatggactgtgttacacaagagggcatgtgggaccactacaaagcagtcccttggggacatggaggcacatgaggttccacctgtacaccagtcccactcctcaggaggctggagagccatgtgtgatgaaagagatgagacctgttgctgcaacaggggtctgctgaagcgaggcatagcactggcctgcttttatcctccaccttcaccacccagctgaggaaaaccagagagcaagcaaggatccttccacagttgaaaagtggccactatgagtcacctcccttcccccagcctgaggaaaagccccaacacttgggggatgagccaccgaggggcttagtgtctgacacatgtcatgaagggctgattaagtccgaaagagtcagagcagtgggctgctggaaagtgtgaaccacaacagtgggggttctctgagacaaaatgggtcccaggatgaggcacatggatggaaatgtatagccctatgtaaaggtcagcagcttaatgggagctaggttgagccccctctgtgcatgagcttgagtgggttttcccagaactgatggaggaggagggtcccttcctcacactcctcattgtgccacagtattcagcccctcttttcagttctgattccttcttctggatgctcctctctatctccttggaccacccgggctttgtcccatattggccctggactctagattgatgagtcacatgtgccctacttggagctcaccacagaccatttcctcatgctgcctgtgaactgaccaatgagaaaaagccaaggaattagctcatttggaggattaaagaaggaaagaaaaagaaaatgaagaaaaaaaaaaaaaaaaaacaagaagaaagaacagcagaaataaagaccaacatgttctcaaaagccctgaaacaattagagggaagctgtaagagacggaaagatcaaaccaaaaaagctttggaccttgtcaagcacggacccaagtaggaggcagcccctcgcctttcctggatgccaccatgaggctgatgtccctggtgctgttcctcacctttgtcctgctggctttcagtgctggtcacatcctagcaggattagcggagggggaaagcagggaccagaaaatgtgggtcagagaggggagttcagctgtgctgccctgccacttgagccccagaaaaacgagaaagagcttgaagcagctgcccgacaagatatctgtgcagtggaagaggcatgggggaagtgtccaccaggagtcacatggggtactggaggtggggtactcgggcctccagaagacggcactgctcatgaagccccgggtgtcactccaggactctgccttacacaatggcaatttctccctgcggattgaccccgtcaggagcgaggacgctgggctgtacgaggcacgggtggaatacaactcggaggtccatagctgccatgtggaactgggggtaattacagtaaccctcagtccacccaatcctgtggaagaaaatgagccgctcttgatgagctgcaactccagctaccaggccagccttgtggagatatgttggttccataacgggcacctgggccccacctccaggaccttctgctctttgtctggggctctctccatcctgcggccagccatgagtgatgcaggctcctggcgctgccagcttcgatactctgataacgagataatttctgccacgtacaacctgcaaattctaggttttgatggcccaaccaaccctgtggtctatgctgcagctggctctgcagcccatctaccatgcagcctgagctaccttcccagttcctttcagatgaacatggtgacagcccactggagccatcttgcaggaggacacttgcaagactgggacatcttcccaaatctgagtaacagaagcttccccctgcatctccctgtggtggggccgcgtgatgcagggcagtaccgctgtgctgtctctgtgggccacaaaacaatcagcagggaggtgaccttggcagtggttacagtgactccaagcatccaaggaccagtttctgaggggagtcgtttgctgctcatctgcagcctcacacactcccggggacatgaacgtttccagtggaagcaccttggctcagtccccactaagagcaagctggctgtggccaccctccaaaacctggagggcagcagcgcccagatgggacctatcttgaaaatacccaaagtgtcacaaaaggatacgggcacatgggaatgcagtgtatatggcccagaaggccaactgggaggagtggagtacaagctgcagatcacaagtgcccaggtctccagccctcctgctatgttcagtgggcaagttacttttgggctcacactcaccctcttccttctgcttgctgtctgtgttgtggctctggccctacagaaaagggcacagactcctgccttctcagcactggaagggatgattggagtccctgggccgaggaagtcgatgaaggaaaaccagaaagggaagatccagcaaactgagtgctgatagaagcagggacaccagggctagtctgcatgggaggatgaaaatctgtgtgccgtgctgcagagagatgggtgccatgcagacctgtcaggggggtctagggatggcatgaacaatgcagaaggcattgggagctctgtatctgcagaggggctgggagctgcctaccagggcaaggcaagcctcactgctgcagtaaggtggccagcagcacagatgctttggagctattgggagtatttgagccagtagctattgcctgctttagtgccaaatctctgcctactctttgtccttttttcgtggctcctctcacaacctttctctggtggaacaccaggatgcaggagatggctggaatctgtctttcctgcagcctgatggtgttttctgccccccttgctcgctttcttctccctctgcctgcactgccctgatcactgccctgttgcatattttgagcattttaacttattagaaactcattttagaactgaaaataaatcta

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