LOCUS       XM_017813858            3517 bp    mRNA    linear   VRT 11-AUG-2016
DEFINITION  PREDICTED: Lepidothrix coronata NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X3,
            mRNA.
ACCESSION   XM_017813858
VERSION     XM_017813858.1
DBLINK      BioProject: PRJNA338288
KEYWORDS    RefSeq.
SOURCE      Lepidothrix coronata (blue-crowned manakin)
  ORGANISM  Lepidothrix coronata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae;
            Lepidothrix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016690223.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Lepidothrix coronata Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Lepidothrix coronata"
                     /mol_type="mRNA"
                     /isolate="B3197"
                     /specimen_voucher="LSUMZ:110521"
                     /db_xref="taxon:321398"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
                     /country="Peru: Loreto Department, 1.5 km S Libertad, S.
                     bank Rio Napo, 80 km N Iquitos"
     gene            1..3517
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:108496803"
     CDS             228..3410
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X3"
                     /protein_id="XP_017669347.1"
                     /db_xref="GeneID:108496803"
                     /translation="

MALFPAFAGAVQPEDPPAGSTEGSRKELDWLSNPSFSTEDALLLHQRTTEAANLIPEKSPLKSRTSSRSELSGESDTDESLKEGSKKRKKKKKKHHHYKKTKRKTKGDSSSSESDVDSKHIKNKGSDRNGEKEAAANLGKKTSNLTSSRSVWLDDVQAFTTDTFRIDKKPDPGNWTYKSLYRGDIARYKRRGESCLGIDVKKQCITWDSSTSKRKQVQIQPERYFTKSNVKMLNTDGIPVCNKDCPSDPPAFIPVSQAETDDSSDRKEVNPLGIYDPSTAAWLQGKGDKSADNESVNTQQTIQEPGINMNPILMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCAEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVALKDDDEDDEEIDEDQEIKDKTLPKWHIWLDIEYAREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPNLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMLRGRRQIGHCKEGEEFIQNVFHVLFQIFTGKEKSNLSICWLQYEIYKVIQCLKAKKKKKLKAQGRRSKKLAKNFLKAPDNRNNLTLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSAHLCSLSLLYAQLEVELLESIEGAVMSRAVHILTKLTESGPYVPYSGQVLPVNVLKARKTYEHTLQDYLSKMPVSDQDQVSDADQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGPQKCEKTGENFGIQNFSSALEAVMLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDNVTRSTNSLEPWLFAIQAEQMRKKLTEKVQRCW"

     misc_feature    714..992
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(714..740,747..752,762..767,771..773,777..821,
                     828..836,840..848,870..878,888..893,897..902,909..929,
                     948..959,969..992)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1182..2177
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

tctcctcttccccgagcagttccctcctccaatgccacagtgacggcggcggcgggcgcacgacaccggaggcccacagaaggcagaacgcctgcagcaaccctaatgtccatcccaccgccattttggggcgggcggaagaactacaggtcccagcgcgctctgcgccgcggcgccatcttggtgctgagcagtcggggtgggcggtggcggcggccggcccagacatggcgctgttcccggcctttgccggggccgtccagcccgaggacccccctgccggcagcaccgagggctccaggaaagaattagactggctgagtaacccgagcttctctacagaagatgcactattactgcaccagcgcactacagaagctgccaatctcattcctgaaaaatcaccactaaaaagcaggacttcttcaagatctgagttgtcaggagaaagtgatacagatgagagtctgaaagagggaagtaagaaaaggaaaaaaaaaaagaaaaagcatcaccactataagaagacaaaaaggaaaaccaaaggggactccagtagcagcgaatcggacgtggacagtaaacacatcaagaacaaaggaagtgacagaaatggtgaaaaggaagcagcagcaaatctaggtaagaaaacatcaaatcttaccagcagtcgctctgtttggctcgatgatgtccaggctttcacaacagacaccttcagaatagacaagaaaccagaccctggaaactggacctacaaatccttgtatcgtggggacatagcaaggtataaaaggagaggggagtcctgccttggcatagatgtgaagaaacagtgtataacttgggacagttctacatcaaaaaggaagcaagtacagattcaacctgagcgctactttacaaagagcaatgtgaagatgctgaacacagatgggattcctgtttgcaataaagattgtccatctgacccacctgcttttataccagtttcccaagcagaaactgatgattcttctgacagaaaagaggtaaatcctcttgggatttatgatccatcaactgcagcgtggctacaaggaaaaggggacaagagtgcagacaatgagtctgtaaatacgcagcaaacaattcaagagcctgggataaacatgaaccccatcctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacccagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactcaagttaatcttagaaaagaaactggctatattagagagggcaattgaaagtaatcccagtaatgttgatctgaaacttgccaggctgaagctttgcgcagagttctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttgcatcccaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctatggaaaatgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaagaagccatgctggctatatttattcaacagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggaggatgggttgctcttaaggatgatgatgaggatgatgaagagatagatgaggatcaagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatatgcccgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttcaaatccaaatcttcaacatcaactgttgtactcatttttgcaattcctaggagttccatgtacaagtaaactctttccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccgctgacttctgttgattttccactttctggattcaacagtattggtcatatggacacaatgctacgagggagacgtcagataggccactgtaaagaaggagaggagttcatacagaatgttttccatgttctattccagatatttacaggaaaggaaaaatctaatctgtctatttgttggttacagtatgaaatatataaggtgattcaatgtctcaaagcaaaaaagaaaaagaagctaaaagcacaagggaggaggagtaaaaagctggccaagaatttccttaaagcacctgacaaccgaaacaaccttactctctggaaactctatgcctacctagaatggctgcttggtaacacagatgatgccaggaaggtgtttgacacagctctttgcacagcagggacaggaggattgaagagtgcccacctctgcagcctcagcctgctttatgctcagctggaagtggaactgctagaaagtatagaaggggctgttatgtcacgtgctgttcatatattgaccaaattgactgaaagtggaccatatgtgccctatagtggacaagtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatacactgcaagattatttaagtaaaatgccagtttctgatcaggatcaggtcagtgatgctgatcaactggttaacttggttggttgttatgcactgttccagtatttgactgttgggattgatgccgcagtactaatatatacacaggcttcagaaaaacttgaagcttctggtccacagaaatgtgaaaaaactggagagaattttggcattcaaaatttttccagtgctcttgaagctgtcatgctgctgcatacaaatttactgagatttcacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaagaaagtcccacagtgctagcaaagcacgaagattttttgataatgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaagtccagagatgttggtgaagtacattgtactattcctgaaactggattaacaaatcgcattgtagctctatttgaacacgcagttcagagtgaaaatggtacccattgtccattgctgtggagaa

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