2024-04-25 00:32:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017797896 3638 bp mRNA linear ROD 24-JUN-2019 DEFINITION PREDICTED: Nannospalax galili argonaute RISC component 4 (Ago4), mRNA. ACCESSION XM_017797896 VERSION XM_017797896.2 DBLINK BioProject: PRJNA254049 KEYWORDS RefSeq. SOURCE Nannospalax galili (Upper Galilee mountains blind mole rat) ORGANISM Nannospalax galili Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_008337140.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2019 this sequence version replaced XM_017797896.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Nannospalax galili Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3638 /organism="Nannospalax galili" /mol_type="mRNA" /isolate="Female #2095" /db_xref="taxon:1026970" /chromosome="Unknown" /sex="female" /tissue_type="brain" /country="Israel: Animal Facility of the Institute of Evolution, University of Haifa" gene 1..3638 /gene="Ago4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 35 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:103733330" CDS 190..2574 /gene="Ago4" /codon_start=1 /product="protein argonaute-4" /protein_id="XP_017653385.1" /db_xref="GeneID:103733330" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 199..453 /gene="Ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 484..636 /gene="Ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 637..999 /gene="Ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(793..795,838..840,880..882,892..894,946..948, 967..969,973..975) /gene="Ago4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1138..2445 /gene="Ago4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1549..1551,1561..1563,1597..1608,1615..1617, 1639..1641,1648..1650,1660..1662,1672..1674) /gene="Ago4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1753..1755,1759..1761,1999..2001,2413..2415) /gene="Ago4" /note="active site" /db_xref="CDD:240015" ORIGIN
tctttaggccctccaactagcctcttccagccacctcgtcgtccaggccttggaactgttgggaaaccaattcgactgttagccaatcattttcaggttcagatccctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacggcctcgtagagtcaacagggaggtagtagacactatggtgcggcacttcaagatgcaaatatttggtgatcggcagcctggctatgatggtaaaagaaacatgtacacagcacatccactgccaattggacgggatagggttgatatggaggtgaccctcccaggtgaaggtaaagaccaaaccttcaaggtatctgttcaatgggtatcagttgtaagccttcagttgcttttggaagctttagctgggcacttgaatgaagttccagatgactcagtacaagcacttgatgttatcacaaggcatcttccatctatgaggtacactccagttggccgttctttcttctcacctcctgaaggttactaccaccccctgggagggggcagagaggtttggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgatgtatctgcaactgctttctaccgggctcagcccatcattgagttcatgtgtgaagttttagatattcagaacatcaatgaacagaccaaacctctaacagactcccagcgtgtcaagtttaccaaagaaattagaggtctcaaagtggaggtgactcactgtggacagatgaaacgaaaatatcgagtttgtaatgtgactagacgaccagccagtcatcaaacctttcctctgcagctagaaaatggtcaagctatggaatgtacagtagctcagtattttaagcaaaagtatagtctgcagctgaaatatccccatcttccctgtcttcaagtgggacaagaacagaagcatacatacttgccacttgaggtctgtaatatagtggcaggacagaggtgtataaagaagctcacagacaatcagacatccacaatgatcaaggccacagcgagatctgctcctgatagacaggaagaaatcagtagactggtgaagagtaacagcatggtgggtggacctgacccataccttaaagaatttgggattgttgtccacaatgagatgacagagctcacaggcagggtgctcccagctccaatgctgcagtacggaggccggaataaaacagtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagtggcttgttttgcgcctcagaaacaatgtagggaagatttactgaagagtttcactgaccagctgcgtaaaatctccaaggatgcaggaatgcccatccagggtcagccatgtttctgcaagtatgcacaaggtgcagacagtgtggagcccatgtttaaacatctgaaaatgacatatgtgggcctgcagctaatagtggttatcttgcctggaaagacaccagtatatgcggaggtgaagcgtgttggagatacccttctaggtatggccacacagtgtgtccaggtaaaaaatgttgtgaagacctcaccccaaaccctttccaacctttgcctgaagataaatgcaaagcttggaggaattaataatgtgcttgtacctcaccaaaggccctcggtgttccagcagcctgtcatctttctgggagcagatgtcactcatccccctgcaggagatgggaagaagccctccattgcagctgtggtaggcagcatggatggccaccccagccggtactgtgccacagttcgggtccagacatcccgacaggagatttcccaggagctcctctacagtcaggaggtcattcaggacctgacaaacatggttcgagagctgctgattcagttctacaagtccacacgcttcaaaccgactcgcatcatctattaccgtggaggggtatccgagggacagatgaaacaggtagcttggccagagctaatagcaattcgaaaggcttgtataagcttggaagaagactaccggccaggaataacatatattgtggtacaaaagagacatcatacacgactcttctgtgcagataaaacagaaagggtggggaaaagtggcaatgtcccagcaggcactactgtggatagtaccatcacacatccatctgaatttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcactgcagatgagctccagctactgacttaccagctgtgccacacttatgtgaggtgcacacgctcggtctctattccagcccctgcatattatgcccggcttgtggcatttagggcaagatatcacctggtggataaagatcatgacagtgcggaaggcagtcatgtgtcaggacagagcaatggccgggatcctcaggccttggctaaggctgtgcagatccaccatgatacccagcacacaatgtattttgcctgagagtctcagaaaaaagaactcaaccagtttggcacccaacacatcctcaaaatgtttcaaatgcctaccacctctagatagctccaaggtgacttcaggtggtcttctaccagcagctcagaatagttgcactgaatctatactttgcagccctgtctgatgcatctacaaaattgagccattttttaatagatactcatagattatcttttctgatgcactggacagaatttttacctcaatgtgcaaaggctgatagcctgaactttctaaaggactttccaagaaaggtttctatggatattttgctagctgtggtgttcaccgcatccctctagtcttagaagaatatttgttttttctgtgctcattgagtgggatgtatgcataagtgggagagaaaaaccaaacaatctatttcatttccatgtaactttttaattgggtgggctcatagactttttaatggagatttctgactgccactgtaaatgcctttaacaaacattcgtttttgaaagttttacagaattttgttactcttactattttatctgtggatttgtgctggtgcaagtacaggctgccaggcaattgtactatatttgtcagcagatccaaacggcaattgtctaatttggttgacttttgtgaatgtgtgacataaacagatataatgcatgtcatagggacagataacactgccttggtaaaagtacccatgtttctccctatttaaaaaaaaaattagcttttagtatttttccaacttttcaaaagtgcccattttatgctgctgtgtggttttttagatctaaatggtttttaaacttttctcatagaaagttaactttggcaataagcatttttttaaggtccctccctctttctcccgctgatgatgtagttttctaaatgagatttcagtatgattttatcagctatttcttatatatcataacctggaagtttcggaaaccagtcagaaaagacatatatttccatgccttttaaaagaattgtttttacctattttatagtcacagttggtgtcctgtcacttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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