2024-04-26 20:57:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017660998 8635 bp mRNA linear MAM 30-OCT-2020 DEFINITION PREDICTED: Manis javanica argonaute RISC component 1 (AGO1), transcript variant X7, mRNA. ACCESSION XM_017660998 VERSION XM_017660998.2 DBLINK BioProject: PRJNA666704 KEYWORDS RefSeq. SOURCE Manis javanica (Malayan pangolin) ORGANISM Manis javanica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023436065.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 30, 2020 this sequence version replaced XM_017660998.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manis javanica Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8635 /organism="Manis javanica" /mol_type="mRNA" /isolate="MJ74" /db_xref="taxon:9974" /chromosome="Unknown" /sex="female" /dev_stage="adult" /collection_date="2017" gene 1..8635 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns" /db_xref="GeneID:108397530" CDS 229..2802 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X7" /protein_id="XP_017516487.1" /db_xref="GeneID:108397530" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 328..720 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 748..900 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 901..1263 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1057..1059,1102..1104,1144..1146,1156..1158, 1210..1212,1231..1233,1237..1239) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1396..2673 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1807..1809,1819..1821,1855..1866,1873..1875, 1897..1899,1906..1908,1918..1920,1930..1932) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2011..2013,2017..2019,2227..2229,2641..2643) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
tcgcgcctgcgcactagcagctggccgggcgctcgctgggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggcagcggcgctggcggccgggcttggtggtggagccgagcccggcccgggagccctagcagctaaggtgcggggtacctaggcccctcacgctggactccacagtctccgggccgcctgacctctgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatcccgaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaacgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccctggttagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccagtgattgagttcatgtgtgaggtgctggacatccggaacatagatgagcagcccaagcccctcactgactcccagcgcgttcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtgggcagatgaagaggaaataccgtgtatgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtagagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaagaacaaaagcatacctacctgcccctggaggtctgcaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaactatgataaaggctacagctaggtcggccccggacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaagtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgagccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagataaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcggacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcataattgtcatcctgccagggaagacgccagtatatgctgaggtgaaacgtgttggagatacactcttgggaatggctacgcagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagacgctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcagcagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtcggcagtatggatgcccacccgagccgttactgtgctactgtgcgcgtacagcgaccacggcaggagatcattgaagacttatcctacatggtgcgtgagctgctaatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccaactcccccagatccttcactacgagctgctggccattcgtgatgcctgtatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagcggggaccactgtggataccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgaactccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagagggcagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagctgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccacccaaatccagaggacgagggaggaggaaggggggtagggaagaatacagaaggccttgtttccttctacaaagggggcaaaaggttggggaacagggccagtaagccagaccaccagccagaaatctctgatatccacctcatgcccctgacccctcacccatcttgtcacatctggccctgaccccactggaccaagaagggcagcatcagtgcccaccatacacacaggtgtctcatgtgactcacaatgctaaagactcatgcctgacagcttggtaaagtcagctctgcagccctatggacaaaagctggtagatttgggcttgatattttagatgggaaagtgagaggcttgagaaagtgggtgggaggagggaaggattctttaggagccttaatcagaaaaggtctagatttgtttaagaaaaaaaagtgaaacctgatccagatcaatattttagaatactagatgttttaatgggttgggaatccagtttgtaggaagatttttaatgctaatggtttcatttgctcctccccagctgccaccacccctttcctatattcctctttctccaccttttctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaaatgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttgggggatggggtgggggtgggaaaggaggtaggtagggaagaaatacccctaactcaacaagcctccagccagagcgccagcaattttgcatttgaaggaattgacttccatattcattgagcttttaaaaagatcacaacctcaaaatggttaaaatccattgacatttgcactttcagacatgacaagtctcggagctgctgagatgactggcccctggcctttccacttatgtctcctcttctccctgtctcccgtatcttcccacctgcctggatctggaggagttacttccctagcatttcttgctcttggcttttctcctgatggtcaagtctcttatgtttcaatatttcttaactggggtgtcttataacaaatgatccttaggtctaaaataagaaaaaagagcaaaaactaaatgttatttttataccataactcgagtctattgccaaaatctggaaatccctcccatgcccagtgagtttacatcccagaaacatggagccatcagaaggaactatgtacctgacttgttctttggcctggccaggcaggtgggtctagccccagggtggggctcagacactatccttcctcgtgcagataatacctttttcttgctacaggttccctctgcactgccttgcactctttcttgcaaatgcatcttccctttttctagactgtcctcctgacactttggctcattcccaattccagtgtgtcctgtggacagactggggattttgctgctccctattgcttctgtttacacaaatgaattttcctgatttccccactagggcatgtaagtgggtggcatgattctttttttttttttttgtcgtatccttggataaagatgggtttggctgtcttacagacctggaaaagtagggggttctagcttggtgcctgctggccttgaagcgaggcccccctttttcctgagctgttcattttttcctgtcccactcctgaggtgcagttagagcttcagtgtggaagtttctctttctgaggaacctgggctttggtttgccccaatctggtgataaagccatgatagtttagacctagctcaggcttggaggccagccagaggaaggccagtctgaatctgggcctttgtatttagagctaccatttcccctctccagcagcccttgtacaaacccagatttgctatgcaaaacagtctatcccaggttctgtttgggttggttcttggttcagtgacttcacaaaacatagcacaaacattgattatgaagaaggcatcaggactgttgagtaactcctcctttacttccttcctactggctatagcgtgtggtgccccatgggcacagcccagctgcagaacaaaatggagggttctcggaggaggcaactcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgttcatcgccttcatatactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacagtgggctctgcatgttctcttcttgggtgcattttggggctaggatcagggcactattcctggagggtccagttattcaccagcatttgcaaatgtccacagggagctggtggtagccacctactctcaacacgtttgtgttctctctttctctctttgcctcactctctcacatgggttttgagctggggcttgaaatgcattttttagctctttggcattgcacatgccactcaagaaataaatgcaaaagcagcagcttggacattggcaagaaaacgacttcttgcttttaattttattttttttaatctttgagactgaaaaatacctttgaccttgaggattattcttgtttgaaaggtagtgcatgtagattgagaagtgctgttggcgacaagctttggttttctgggctttggtttaagtggtgcttcttaagctctgaggaagtgctggggtgaccccagcctcatcctcttagataggtcttttaccccctttgttctactctttgccttccttttcctcttctttctgttcctggcttcctgttccttctattcactcagcttatctactggcctgcctatgtaatgatgaattctctgcatggctacaatgctctcactgttatcttggcaaggtcaggcttagctctttggctttggaagaccaagaatctattccccaagtccagtgatgtcctttctgggctggactgccatcaagctcacacaagggtagagcagcaggcctgcccaactagcatgaaatcaggagggcttctggcaacttccacgcctgtctactccttggggtcagtatctctcgacttttcttgatctggttccatttctctctacctggggcctcccttttctaaggatatcctagggttgagctattgggtatccagggttgaagggttaagggatggacatgggggaggaaaagagtgatgggaagagaatggagaggatttggataaaaggtaggaaaggagagcactgctcactggtaatttttccaatccagcctgtcccactgggggttgaggtgctacttctggcctctggggataaacctgggctgtttttgctgggaacctaagcttagactaatgctgaaaggggtatctaaaagtgtgaaacctgcctataaagctcctggttcccacctacagatagctcctctgtggccgcctctttggctcaacaagttcctggataagtttttcttttttcgtgcccagaattctgtaaatgagtctggcactcaagatgggcagccaaggggacactttgatttcttagctggaccatggtatacagtgggacagtgttttagacctggtatcatatgtaacaaacaaggatggaagttccttccccttcaggatagaaagtcatcttaaacgagccaaaatgcagttttggaaactacatcaggggaagttatttttatttatatttacatttactgggcctaggccaacccaggatggtagctgggatgccttccttcttaaagtttgatcatggcagggatatgcagggcactctttcctttttggccttctgagcataatgggaagaagggattctctggttttcttcccccattccccaccctccattaattaggacttgccttctccctgggcagggagagaggctaggttggtgctctccccttactctattcctactgactcagaacctctggctgctgtttgggagcccaagaaagggagtggagggaatgggctcaaaacaaaacagaataaggtgaggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaagaattgtgcaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacctgactggtgtgtgatgttgcacttagcagccatccggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttgttcctctcaagtccagcatggatggggaaatgtccctagagccccacagctgtgtacttgtttgcattttgtttccctctgagacttgtgtttgtgtcatgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaagagcagcagcacaattctgtgttttataaagatgacagtggcttctatttctaaagtgcggtctctctctctttttttttcctattagcaaaacaaactattggaattaatcatatctctggtagattttagtttagagtaacagattattacaagagcagaaccatcacttctaaaggaagaaagtagataaaacaaattccagagtgttgaaactgcatattctatggaatcatacagggtctccacttattctttcaacaaatacacaaagcaccatgtctagcagtactgtgggggagaaggcaagcacaattcaaaattgagaaaaactgtttttttccttaaggaccttaaagtttgatgggggatatgaataaccaaatggttctggtataggagtgagatgggggcctggattgaggctgtaaagctatagcaatgaggatagagaagaaaggcaaatttgagacacactcaggaaatagaattaataggactcaatggatgatggaggaagaagagagtagaggctaatgcctgggtttctgcttagaagcagtgagtaaattgggactctgatcaagattggaggagaaggaagactcagaaggaaggtggtgaatttattgtaaagaaagacaattagccttttatagactgggttttgaggtttccatggggcaacgaggttaagggtgtcaataaacacttatgttttggtgctcaggaaagactataaaactgtagttatagatgtgagattcatactcataggtggtagttaaaagccacaggaatgaacaagatggcttaaagaaagagtaaagcaagagaaacatagcacacaactctaggaaaacacttaaactgtgggatgaggagaggaagcctacctaagatgactcaaatcactagtagataccatatatttgactgatttaatgagatgggagaaaaatcaagagagtggaataggatccaagaagggcatgattaacaacataagctgctgcattgaggaggggatgttattttccagtcactttatcattctccatcccatcttctctgggatcttataattttatggtcattctccagtatttcttgaaaatgagcactggaaaaaccaactttaagtaagtctaagactaggactttcaaggtgttcaccacaaccaccactgccatctccacctccagcttcctgtcctcaggagatacttgtaaaagaataaaataaacaaacctaattttgttcctca
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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