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2024-04-25 09:06:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_017607840             696 bp    mRNA    linear   INV 28-JUL-2016
DEFINITION  PREDICTED: Rhagoletis zephyria dehydrogenase/reductase SDR family
            member 4-like (LOC108356739), partial mRNA.
ACCESSION   XM_017607840
VERSION     XM_017607840.1
DBLINK      BioProject: PRJNA331175
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rhagoletis zephyria (snowberry fruit fly)
  ORGANISM  Rhagoletis zephyria
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Tephritoidea; Tephritidae; Rhagoletis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016221299.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Rhagoletis zephyria Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Rhagoletis zephyria"
                     /mol_type="mRNA"
                     /isolate="East Lansing"
                     /isolation_source="snowberry"
                     /db_xref="taxon:28612"
                     /chromosome="Unknown"
                     /tissue_type="whole body"
                     /country="USA: Michigan, East Lansing"
                     /collection_date="2010"
     gene            <1..696
                     /gene="LOC108356739"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins"
                     /db_xref="GeneID:108356739"
     CDS             <1..696
                     /gene="LOC108356739"
                     /codon_start=1
                     /product="dehydrogenase/reductase SDR family member
                     4-like"
                     /protein_id="XP_017463329.1"
                     /db_xref="GeneID:108356739"
                     /translation="
TLKHFGGIDIFVSNAAVNPAKSHILETSDEVFEKILAVNLIAPFSLSKDIVPHMVKRGGGNIIYIGSASGYMYQGAQNLSERMAAYAISKTALLGLTKAVAGKCAPLNIRVNCVAPGLIETDFAVSITGSPDYPGSFLPLQXATSSTSAAPPGAPLNIRVNCVAPGLIETDFAVSITGSPDYPGSFLPLQTIKRIGRAEEVAGMVAFLCSKDASYISGETCTVAGGNGTRL"
     misc_feature    <1..693
                     /gene="LOC108356739"
                     /note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
                     NADB_Rossmann; cl21454"
                     /db_xref="CDD:451247"
     misc_feature    order(115..117,199..201,256..258,268..270)
                     /gene="LOC108356739"
                     /note="active site"
                     /db_xref="CDD:187535"
ORIGIN      
actctaaaacactttggtggcatcgacatctttgtctcgaatgcggcggtcaacccggcaaagagccacatcctcgaaacgtcggacgaggtctttgaaaagattctggccgtgaacctcatcgcgcccttctccctctccaaggacattgtgccgcacatggtgaaacggggcggcggcaacatcatctacatcggcagcgcctccgggtacatgtaccagggggcgcaaaacctctcggagcggatggccgcctacgccatctcgaagaccgccctgctcggcctcaccaaggcagtggctggaaagtgcgccccgctcaacattcgcgtcaactgcgtcgctccgggcctgattgagacggactttgccgtcagcatcaccggcagccccgactacccgggcagctttctcccgctgcagncggcaacatcatctacatcggcagcgcctccgggcgccccgctcaacattcgcgtcaactgcgtcgctccgggcctgattgagacggactttgccgtcagcatcaccggcagccccgactacccgggcagctttctcccgctgcagaccatcaagagaatcggccgcgccgaggaagtggccggcatggtcgccttcctctgcagcaaagacgccagctacatcagcggcgagacgtgcacggtggccggcggcaatggtacgcgactttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]