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2024-04-29 13:25:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_016748234            1200 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Penicillium expansum Thiolase-like, subgroup (PEX2_109680), partial
            mRNA.
ACCESSION   XM_016748234
VERSION     XM_016748234.1
DBLINK      BioProject: PRJNA319326
            BioSample: SAMN02928573
KEYWORDS    RefSeq.
SOURCE      Penicillium expansum
  ORGANISM  Penicillium expansum
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Ballester,A.R., Marcet-Houben,M., Levin,E., Sela,N.,
            Selma-Lazaro,C., Carmona,L., Wisniewski,M., Droby,S.,
            Gonzalez-Candelas,L. and Gabaldon,T.
  TITLE     Genome, Transcriptome, and Functional Analyses of Penicillium
            expansum Provide New Insights Into Secondary Metabolism and
            Pathogenicity
  JOURNAL   Mol. Plant Microbe Interact. 28 (3), 232-248 (2015)
   PUBMED   25338147
REFERENCE   2  (bases 1 to 1200)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1200)
  AUTHORS   Ballester,A.-R., Marcet-Houben,M., Levin,E., Sela,N.,
            Selma-Lazaro,C., Carmona,L., Wisniewski,M., Droby,S.,
            Gonzalez-Candelas,L. and Gabaldon,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2014) Bioinformatics and Genomics Department,
            Center for Genomic Regulation (Barcelona), Dr Aiguader 88,
            Barcelona, Barcelona 08003, Spain
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_015971421).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Penicillium expansum"
                     /mol_type="mRNA"
                     /strain="MD-8"
                     /isolation_source="fruit"
                     /host="apple"
                     /db_xref="taxon:27334"
                     /chromosome="Unknown"
                     /country="USA"
                     /collection_date="1992"
     gene            <1..>1200
                     /locus_tag="PEX2_109680"
                     /db_xref="GeneID:27683655"
     CDS             1..1200
                     /locus_tag="PEX2_109680"
                     /codon_start=1
                     /product="Thiolase-like, subgroup"
                     /protein_id="XP_016595076.1"
                     /db_xref="GeneID:27683655"
                     /translation="
MIKPVYIVGAARTPTARINTQLGSVPSTKLGSITIREALHRSKVPLDLFSGVYMGQVLQAGAGQAPAKQAAMQAGLAPDIEATTINKVCASGLKAITLAAQDIQLGYAVAQVAGGMESMSNVPMYSKKGDDCSHKEKPVIDGLLLDGLINASDGRSMGACADGVARQMGISREDQDQYALATYTRACRAQQSNTFQEEIVPVLVDGATAEIFDTDSLPHESLFSRLRSLKPVFSPGGTVTAGNACSLSDGGSAVVLVNGQVAKQFCQENRVLAKIVAYADASVAPHEFALAPTKAIQLVLESAQMCAEQISLWEINEAFAIVVIASQLLLGLDPDRINVNGGAIALGHPLGSSGCRILVTLLHQLSHDQYGIAVICNGGGGATAMLIQRVQGKSLDALA"
     misc_feature    16..1167
                     /locus_tag="PEX2_109680"
                     /note="Thiolase are ubiquitous enzymes that catalyze the
                     reversible thiolytic cleavage of 3-ketoacyl-CoA into
                     acyl-CoA and acetyl-CoA, a 2-step reaction involving a
                     covalent intermediate formed with a catalytic cysteine.
                     They are found in prokaryotes and...; Region: thiolase;
                     cd00751"
                     /db_xref="CDD:238383"
     misc_feature    order(70..72,151..153,193..195,202..204,214..216,247..258,
                     280..282,301..306,313..315,358..360,832..834,838..840,
                     844..846,904..906,1135..1140)
                     /locus_tag="PEX2_109680"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238383"
     misc_feature    order(265..267,1042..1044,1126..1128)
                     /locus_tag="PEX2_109680"
                     /note="active site"
                     /db_xref="CDD:238383"
ORIGIN      
atgataaaaccagtatacattgttggggcggcgaggacccccaccgcacgcatcaatacccagctaggctctgttccaagcaccaaacttggatctatcacaattcgtgaagcccttcatcgctcaaaagttccgcttgatctattctcgggtgtttacatgggccaagtgcttcaggctggcgccggtcaggcccctgcaaaacaagctgcgatgcaggccggattagcgccagacattgaggctaccacaataaacaaagtgtgtgcttctgggctcaaggccattacacttgccgcccaggatatccaactggggtacgccgtcgctcaggtggctgggggaatggagagcatgtcgaatgtcccaatgtactcaaagaaaggtgatgactgcagccacaaggagaagccggtgattgatggtctcctgcttgatgggttgattaatgcctcagatggccggtctatgggggcctgtgctgatggtgtggctcggcagatgggtatctcccgcgaggaccaagatcaatatgcccttgctacctatacccgggcgtgtcgagcacagcagagcaatacattccaagaagagattgtgcccgtgttagtagatggagctacggcggaaatatttgacacagacagtctcccccacgagagcctttttagccgactccggtcattgaaaccagttttctcccctggtggcacagtcaccgctggaaatgcctgctcgctaagtgacggtggctcagcagtggtgctggtgaatggccaagttgctaagcagttctgtcaggagaatcgagtgttggcgaaaatagtggcttatgccgatgcatccgttgccccacacgagttcgctctggctccaaccaaagcaattcagcttgtccttgagagtgcccaaatgtgtgctgaacagatctcattatgggaaattaacgaagcttttgctatcgtggtgatagcttcacaactgctgctcggcttggatcctgatagaattaatgtcaacgggggagcgatcgcacttgggcaccccttgggcagctcaggctgtcgaattctggtcactctcttgcaccagctgtctcatgatcaatatggcattgccgttatttgcaatggaggtgggggtgccacggctatgcttatccagcgagtccaaggtaaaagtttggatgccctagcatga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]