2024-04-29 13:25:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016748234 1200 bp mRNA linear PLN 28-AUG-2017 DEFINITION Penicillium expansum Thiolase-like, subgroup (PEX2_109680), partial mRNA. ACCESSION XM_016748234 VERSION XM_016748234.1 DBLINK BioProject: PRJNA319326 BioSample: SAMN02928573 KEYWORDS RefSeq. SOURCE Penicillium expansum ORGANISM Penicillium expansum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 1200) AUTHORS Ballester,A.R., Marcet-Houben,M., Levin,E., Sela,N., Selma-Lazaro,C., Carmona,L., Wisniewski,M., Droby,S., Gonzalez-Candelas,L. and Gabaldon,T. TITLE Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity JOURNAL Mol. Plant Microbe Interact. 28 (3), 232-248 (2015) PUBMED 25338147 REFERENCE 2 (bases 1 to 1200) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1200) AUTHORS Ballester,A.-R., Marcet-Houben,M., Levin,E., Sela,N., Selma-Lazaro,C., Carmona,L., Wisniewski,M., Droby,S., Gonzalez-Candelas,L. and Gabaldon,T. TITLE Direct Submission JOURNAL Submitted (19-AUG-2014) Bioinformatics and Genomics Department, Center for Genomic Regulation (Barcelona), Dr Aiguader 88, Barcelona, Barcelona 08003, Spain COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_015971421). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1200 /organism="Penicillium expansum" /mol_type="mRNA" /strain="MD-8" /isolation_source="fruit" /host="apple" /db_xref="taxon:27334" /chromosome="Unknown" /country="USA" /collection_date="1992" gene <1..>1200 /locus_tag="PEX2_109680" /db_xref="GeneID:27683655" CDS 1..1200 /locus_tag="PEX2_109680" /codon_start=1 /product="Thiolase-like, subgroup" /protein_id="XP_016595076.1" /db_xref="GeneID:27683655" /translation="
MIKPVYIVGAARTPTARINTQLGSVPSTKLGSITIREALHRSKVPLDLFSGVYMGQVLQAGAGQAPAKQAAMQAGLAPDIEATTINKVCASGLKAITLAAQDIQLGYAVAQVAGGMESMSNVPMYSKKGDDCSHKEKPVIDGLLLDGLINASDGRSMGACADGVARQMGISREDQDQYALATYTRACRAQQSNTFQEEIVPVLVDGATAEIFDTDSLPHESLFSRLRSLKPVFSPGGTVTAGNACSLSDGGSAVVLVNGQVAKQFCQENRVLAKIVAYADASVAPHEFALAPTKAIQLVLESAQMCAEQISLWEINEAFAIVVIASQLLLGLDPDRINVNGGAIALGHPLGSSGCRILVTLLHQLSHDQYGIAVICNGGGGATAMLIQRVQGKSLDALA"
misc_feature 16..1167 /locus_tag="PEX2_109680" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:238383" misc_feature order(70..72,151..153,193..195,202..204,214..216,247..258, 280..282,301..306,313..315,358..360,832..834,838..840, 844..846,904..906,1135..1140) /locus_tag="PEX2_109680" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238383" misc_feature order(265..267,1042..1044,1126..1128) /locus_tag="PEX2_109680" /note="active site" /db_xref="CDD:238383" ORIGIN
atgataaaaccagtatacattgttggggcggcgaggacccccaccgcacgcatcaatacccagctaggctctgttccaagcaccaaacttggatctatcacaattcgtgaagcccttcatcgctcaaaagttccgcttgatctattctcgggtgtttacatgggccaagtgcttcaggctggcgccggtcaggcccctgcaaaacaagctgcgatgcaggccggattagcgccagacattgaggctaccacaataaacaaagtgtgtgcttctgggctcaaggccattacacttgccgcccaggatatccaactggggtacgccgtcgctcaggtggctgggggaatggagagcatgtcgaatgtcccaatgtactcaaagaaaggtgatgactgcagccacaaggagaagccggtgattgatggtctcctgcttgatgggttgattaatgcctcagatggccggtctatgggggcctgtgctgatggtgtggctcggcagatgggtatctcccgcgaggaccaagatcaatatgcccttgctacctatacccgggcgtgtcgagcacagcagagcaatacattccaagaagagattgtgcccgtgttagtagatggagctacggcggaaatatttgacacagacagtctcccccacgagagcctttttagccgactccggtcattgaaaccagttttctcccctggtggcacagtcaccgctggaaatgcctgctcgctaagtgacggtggctcagcagtggtgctggtgaatggccaagttgctaagcagttctgtcaggagaatcgagtgttggcgaaaatagtggcttatgccgatgcatccgttgccccacacgagttcgctctggctccaaccaaagcaattcagcttgtccttgagagtgcccaaatgtgtgctgaacagatctcattatgggaaattaacgaagcttttgctatcgtggtgatagcttcacaactgctgctcggcttggatcctgatagaattaatgtcaacgggggagcgatcgcacttgggcaccccttgggcagctcaggctgtcgaattctggtcactctcttgcaccagctgtctcatgatcaatatggcattgccgttatttgcaatggaggtgggggtgccacggctatgcttatccagcgagtccaaggtaaaagtttggatgccctagcatga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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