LOCUS       XM_016553178            1509 bp    mRNA    linear   VRT 20-JUN-2025
DEFINITION  PREDICTED: Sinocyclocheilus rhinocerous homeobox protein
            Hox-B8a-like (LOC107740672), mRNA.
ACCESSION   XM_016553178
VERSION     XM_016553178.1
DBLINK      BioProject: PRJNA319352
KEYWORDS    RefSeq.
SOURCE      Sinocyclocheilus rhinocerous
  ORGANISM  Sinocyclocheilus rhinocerous
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015630576.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_001515625.1-RS_2025_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/18/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Sinocyclocheilus rhinocerous"
                     /mol_type="mRNA"
                     /isolate="Xijiao"
                     /db_xref="taxon:307959"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="China: Luoping, Yunnan"
                     /collection_date="2012-08-20"
                     /note="semi-cave-dwelling"
     gene            1..1509
                     /gene="LOC107740672"
                     /note="homeobox protein Hox-B8a-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:107740672"
     CDS             154..891
                     /gene="LOC107740672"
                     /codon_start=1
                     /product="homeobox protein Hox-B8a-like"
                     /protein_id="XP_016408664.1"
                     /db_xref="GeneID:107740672"
                     /translation="

MSSYFVNSLFTKYKSGDTLRPNYYECGFAQDLGTRPTVVYGPGTGATFQHAPQIQEFYHHGASTLSASPYQQSPCAVTCHGEPGNFYGYDALQRQTLFGAQDADLVQYSDCKLAAGGIGDETDNTEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKSEQEQIEKEKLEKEQASGTQPAGEDCDKAKEM"

     misc_feature    589..759
                     /gene="LOC107740672"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

ccgttcagtttttggaaatcaaggcttggctgctgcattgtttgttacctcagtaactgtgaaactgataactctctgaagctactgcgctgatataaagacattcaaacgcaaactcttgaacaaaatcagcaccaacaacaacatcaaaagatgagctcatatttcgtcaactctctcttcactaaatacaaaagtggagacactctgcggccaaactattacgagtgcggatttgctcaggacctagggacgagacccaccgtcgtgtacggtccaggcaccggggccactttccagcatgcccctcagattcaagagttttaccaccacggcgcatccacgctctctgcatctccttaccagcagagtccctgtgcagtaacttgtcacggcgagccgggtaacttctacggttatgatgctctccagaggcaaacgcttttcggtgctcaagacgccgacttggttcagtatagcgactgcaagctcgccgcggggggcatcggcgacgagacggacaacacagagcagagtccgtcgcccacacagctgttcccgtggatgcgacctcaagctgccggacggaggcgaggacgccagacctacagccgctatcagacgctggaactcgagaaagagtttctcttcaatccctatctaacacgcaagcggcggattgaggtatcacacgctttgggactgacagaacgacaggtcaaaatctggtttcaaaaccgtcgcatgaaatggaaaaaagaaaacaacaaggacaagtttccaagcagcaagtctgaacaagagcagatcgaaaaagagaaactggagaaagaacaggcatccggaacacagccagctggcgaagactgcgacaaggcaaaagaaatgtaaagcggatgcgagtgtgtgtgtctgtgtgtgtgagagagagagtgtgtgtgtttgtgtgtacgtgtgtcagtcaatcaaaaaggcaaagaataaatagggaaaataaaacaggacaatgacgaagagaataacggtgtttgcatgggaggtttgtctcacagagacattttaatcaagtcgagtggttacatctttcattcgaggaaggaacagaaaaaaaaattactgggactagacgaatgactatacacttaatgtggtgaccacagaacttcaggaagacgaaggacaagaggcatttctactttttaactgttgttcagagagtatgatagtgataaaactagtctcctttctttgtgaaataattatcgtgaaacttaagtttctattgttaggatattgtcattaacaattaccttggcagctgtatagtttttaagttaaatggtgcacttttaactgttctcacttacatgttatgatgatgacgtagaaatgaatgacttccaacaacatgaaactgcctatttatgccgtagaatctctttttacacgtctttggttcttcttaaatcgatggtatttttgttgtcttcctttcatggggtaagcatg

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