2024-03-29 16:39:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016442125 3795 bp mRNA linear VRT 03-MAY-2016 DEFINITION PREDICTED: Sinocyclocheilus anshuiensis NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X3, mRNA. ACCESSION XM_016442125 VERSION XM_016442125.1 DBLINK BioProject: PRJNA319338 KEYWORDS RefSeq. SOURCE Sinocyclocheilus anshuiensis ORGANISM Sinocyclocheilus anshuiensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015548239.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sinocyclocheilus anshuiensis Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3795 /organism="Sinocyclocheilus anshuiensis" /mol_type="mRNA" /isolate="Anshui" /db_xref="taxon:1608454" /chromosome="Unknown" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="China: Lingyun, Guangxi" /collection_date="2012-08-20" /note="cave-restricted" gene 1..3795 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:107654848" CDS 238..3708 /gene="nrde2" /codon_start=1 /product="protein NRDE2 homolog isoform X2" /protein_id="XP_016297611.1" /db_xref="GeneID:107654848" /translation="
MALFPSCAELSGNNSSTGDRAPADLEWLSNQSFSKQDALKTHQRATERVQAEAEEPAGTREQKCKEREDSHGRSNKRKKEKKKKQKKKKSRDNSESGGSESDTVYPSDLLKKENADREEAQVRVSETFMWLDDLQTPSDSPFCIDRRADRANWEYKSLYRGDIARYKRKGGSCLGLDFRMQAVNWNDGGPEKKRVDKKPERYFCPSTRQLLRSDSLPALPVLSEGIAVSSDSYIKLSACTVEQGSSTQAPVSWVNPLGIYDRGTSLWLEGKGQPEVKGDQQDVEAQRSSSTLLSARVEEFNRKLRENPTDTQLWLDFIHFQDELAFGSGSFSAASDTDNDGDMKKMSLRAVLEKKLSIVDRAVESNPANVDLKLEKLHLCKELWEPATLQKEWKKLVFIHPNSAPLWRKYLLFTQSLFSTFSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKAVCLFQALLDFTFFKPDSVKDLPTRQQVDFFEPFWDSGEPRVGERGARGWKAWMLQQERGGWVIPSEPDDDDEEEQDDSEIKDKTWPKWKIWLDVEASREANHWLPWRPDKTKGQSEEDCEDPDRQVLFDDIGPSMIRVDRPDLQLQLILSFLQFLGLPGPSGKFSTTSSSNILLDNLTFLEEGPDPERPLTSYDLPMAGICAVGHMTFLSDCRRQAGLCKAGEEFLQNVLQQTLQLISAQDQAAITLCWLQYEKLKVLRCLRSGNKRQLKSQGKRSKRLVKRLLKEPDNRSSLALWREYAHLEWLLGNLEEARKVFDTALGMGVTRGLNDPVLCNLCFLYAQLEVEQALNSGTVPTSKAVYILTKLAEGAAYTPFSGQINPVTILKARKAYEQALLSFLPEQSTGSNARAPKKLHRMSSLVGCFGLFQYLTMGIDAADAVYNQAIQKLISWNLNSEVTDGSLRRPKVFADWESVAVQHVSLLRHHANTSVFPLSRLRLALTDALSLLPSSASLWQLYLQTENRYHSAGRARRFFHSVAKKTDSVVPYLFAITAEQRLKQMLDSVQRSRLPREALPTLPNNGLSNRIRCLFENATATEHGAHCPLLWRMYLNFMVCDGNAERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEFLDLMTEKELRLRVPMEEVDILLED"
misc_feature 658..945 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(658..684,691..696,706..711,715..717,721..765, 772..780,784..792,814..822,832..837,841..846,853..873, 892..903,922..945) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1132..2139 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
tacgttagacctgcaatgcgtcaagccattgcgctcagtgtgtcccggatcacgcagcactggaaccggcgggccaacaagcccttcggttagacaggacagggctgattaaatttctctcccgggatcagctctcatattatagactcaccgtgagactccttcacatccacaaagctaaggtcgcaggcggatgacgtacccggcgcgcgtctgttttgatctgtgtgaagtaacatggctcttttcccgtcctgcgctgaactgtcaggcaataacagctctactggggatagagctccagcagatctggaatggctgagtaatcagagcttcagcaaacaagatgctttgaagactcatcagcgggccacagagagagtgcaagcagaggcagaagaaccagcaggcacaagagagcagaagtgtaaagagagagaagatagccatggcagatcgaataagagaaagaaagaaaagaagaaaaaacagaagaagaagaagagcagagataactcggagagcggtggatctgaatcagacacagtttaccccagcgacctgctaaaaaaggagaacgctgacagagaggaagctcaagttcgggtgagcgagacctttatgtggctggatgacctccagaccccctctgactcccccttctgtattgacagaagagctgaccgtgccaactgggaatacaaatccctctataggggagacatagccaggtataagaggaagggaggctcttgcctggggttagacttcaggatgcaggctgtgaactggaatgatggaggtccagagaagaagcgagtggacaagaaacccgagcgctatttctgtccttccacccgtcagttgctccggtcagatagtctgcctgctttgcctgtactctctgagggcattgctgtcagctctgattcctacatcaagctctcagcctgcactgtagagcagggctcttccacccaggcacccgtatcatgggtaaatccgctgggcatctatgaccgtggaacctctttatggctggagggcaagggtcaaccggaggtcaagggagatcagcaggatgttgaggctcaaaggagcagcagcacccttctgagtgcacgggtggaagagtttaacaggaagctacgggagaatcctacggacacccagctgtggctggactttatacacttccaggatgaactggcctttggttctgggtcattctctgctgccagtgacactgacaatgatggtgacatgaagaagatgtctcttcgtgccgtgctggagaagaagctgtccattgtggacagggcagtggaaagtaaccctgccaacgtagacctgaaactggagaaactccacctgtgcaaggaactatgggagcctgccaccctgcagaaagagtggaagaaactagtgttcatccatccaaacagcgcccctttatggaggaagtatcttctcttcacacagagtcttttcagcactttctcagtgtcaaaggtcaacagcgtgttcggaaagtgtttaagcacgctcagtgcagtccaagatggcagcatggtgtctcaccctccacttccaggcacccaggaagacctcttagatatctttctacagcagtgccatttcctgcggcaggcgggtcacacagagaaagctgtgtgtctcttccaagcccttctggacttcactttcttcaagccagacagcgtgaaagacctgcccactagacaacaggtggatttttttgagcctttttgggacagtggagagcccagggttggggaacggggggctcggggatggaaggcttggatgcttcagcaggagagaggaggatgggtgattccatctgagccagatgatgatgatgaagaagagcaggatgactccgagatcaaagacaagacctggcctaagtggaagatctggttggatgtggaggcgtcccgagaggcaaaccactggttgccatggagaccagataaaaccaagggccaatcagaagaggactgtgaggaccccgacaggcaggtcttgtttgatgatattggcccatctatgattcgtgtggacagaccagatcttcagctacagttgatcctgtccttcctgcagttcctaggtctgcctggaccttcagggaagttctctacaacatcttcctcaaacattctactggacaatctaaccttccttgaggagggcccagacccggagcgaccattgacctcttatgacctcccgatggctgggatctgtgcagtgggtcacatgacatttctgagtgactgcaggaggcaggcagggctgtgtaaggcaggggaggagtttctccagaacgttctacagcaaactctccaactcatctccgcacaggatcaagctgctattactctctgctggctgcagtatgagaaactaaaggtactgagatgtttacgcagtggaaataaaaggcaactgaagtctcaggggaagcgtagtaaacggctagtgaaacgactgctaaaagagccagataacaggagcagcctggcactctggagagagtatgcccatctggagtggcttctgggtaatctggaagaggcacgcaaagtatttgacactgccttgggcatgggcgtgactagaggtcttaatgatcctgttctctgtaatctctgttttctctatgcccagttagaggtagagcaggccttaaacagtgggacagtccccacttccaaagctgtctacattctcactaaattagctgagggtgctgcctacactcctttctctggccaaatcaacccagtgaccatactgaaggccagaaaggcctatgagcaggccctattgagctttttacctgagcagagcacaggcagcaatgctagagctccaaagaaactccacagaatgtccagcctggttggatgttttgggctttttcagtacctcacaatggggatagatgcagctgatgctgtgtacaatcaggccatccaaaaactgatttcctggaacttgaattcagaagtgacagatggatctctgaggagacccaaggtctttgcagactgggagtctgttgctgtccagcatgtatcactgctgcgccaccacgccaacaccagtgtgtttcctctctcccggctaagactggcacttacagatgccctctccttactgccctccagtgcctcattatggcaactctaccttcaaacagagaaccgctatcacagcgcaggccgtgcccgcaggtttttccacagtgtggcaaagaaaactgacagtgttgtgccatatctttttgccattactgcagagcaacgactcaaacagatgctggactctgttcagaggtctcgtcttcctagagaagccctgcccaccctgccaaataatggtcttagcaaccgtatccgctgtctgtttgaaaatgctacggcaacagaacatggggcccattgtcctctgctgtggagaatgtatctgaacttcatggtatgtgatgggaatgcagagaggggcagtggaatcttctacaaggccctacaggcagtgccctgggtaaagggcttgtacatggacgcagtgcagctgtttcctgaacgtgtgcaagagtttttagaccttatgactgagaaagagttgcgtctgagagtgcccatggaggaggtggacatcttgctggaggactagccatcaaaacccttcccataacacactaaaaatcaataaccactgcccaataaccaacagaaacgaaacagtctctctgaacaacag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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