2024-03-29 16:56:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015883236 5467 bp mRNA linear VRT 18-FEB-2020 DEFINITION PREDICTED: Coturnix japonica argonaute RISC component 4 (LOC107323822), transcript variant X2, mRNA. ACCESSION XM_015883236 VERSION XM_015883236.2 DBLINK BioProject: PRJNA314147 KEYWORDS RefSeq. SOURCE Coturnix japonica (Japanese quail) ORGANISM Coturnix japonica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029538.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 18, 2020 this sequence version replaced XM_015883236.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Coturnix japonica Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5467 /organism="Coturnix japonica" /mol_type="mRNA" /isolate="7356" /db_xref="taxon:93934" /chromosome="23" /sex="male" /tissue_type="blood" /country="France: Tours, INRA PEAT" gene 1..5467 /gene="LOC107323822" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 30 ESTs, 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns" /db_xref="GeneID:107323822" CDS 270..2654 /gene="LOC107323822" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_015738722.1" /db_xref="GeneID:107323822" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 279..533 /gene="LOC107323822" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 564..716 /gene="LOC107323822" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 717..1079 /gene="LOC107323822" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(873..875,918..920,960..962,972..974,1026..1028, 1047..1049,1053..1055) /gene="LOC107323822" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1218..2525 /gene="LOC107323822" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1629..1631,1641..1643,1677..1688,1695..1697, 1719..1721,1728..1730,1740..1742,1752..1754) /gene="LOC107323822" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1833..1835,1839..1841,2079..2081,2493..2495) /gene="LOC107323822" /note="active site" /db_xref="CDD:240015" ORIGIN
cgtgtgggggtggagctccgtgtggtaccggggtctcctcagtgcggggtcgggccgcggtgacaccacaacccgaacctacacaatggcccccagcaagtcttttccagcccccccgtcgcccaggcctgggcactgttgggaagcccatccgcctcctagccaaccattttcaggttcagatccctaagatcgacgtttatcactatgatgtggatatcaaaccagaaaaacgaccccgaagagtgaacagagaagtggtggatactatggtgagacacttcaagatgcagatatttggtgaccggcagcctggatacgacgggaagcggaacatgtacactgcacacccgttacccatcggcagggacagagtggatatggaggtgacgcttccaggagaggggaaggaccagacttttaaggtgtccattcagtgggtgtcagtcgtcagccttcagttgctgttggaagctctggcagggcatctgaatgaagttcctgaagattctgtacaggcccttgatgtgattacacggcaccttccctccatgaggtatactcctgtgggtcgctcctttttttccccccctgaaggctattaccaccctctgggtggtggcagggaggtctggtttggtttccaccagtctgtgaggcctgccatgtggaacatgatgctcaacattgatgtatcagcaactgctttctatcgtgctcagcctatcattgagttcatgtgtgaggtcttggacattcagaacatcaatgaacaaaccaagcctctgacagactcccagcgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggttactcactgtggccagatgaaaagaaaataccgagtttgcaacgttactcgtcgaccagccagtcatcagacgtttcctctgcagttggaaaatggacaggctatggagtgtacagtagctcagtatttcaagcagaagtacagcctgcagctgaaatatcctcatcttccctgtctccaagtaggacaggagcagaaacacacatacttgcctcttgaggtgtgtaacatagtggcaggtcagaggtgtatcaagaagttaacagacaatcagacatcaacgatgataaaagcaactgcaagatctgcaccggaccgacaggaagaaatcagcagactggtgaaaagtaacagtatggttggtggacctgatccatatctgaaggagtttggtattgttgtccataatgaaatgacagagttgacaggcagagttttgccagcgccaatgctgcaatatggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttacagaccagctgcgtaagatctccaaggatgcagggatgccgatccaaggccagccctgcttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttaaacacttaaaactgacttatgttggtctgcagctgattgtggtgattctacccggaaagacacctgtgtatgctgaagtaaagcgagttggtgacactcttcttggcatggccactcagtgtgttcaggtaaagaatgtggtgaaaacctcaccccaaacgctgtccaacctgtgtctgaaaataaatgcaaagcttggaggaatcaacaatgtgctcgtacctcatcaaaggccctcagtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcctgctggggatggaaagaagccttccatagctgctgtggttggcagcatggatggccatcccagccgttactgcgccacagtgcgagtgcagacctcccgacaggagacatcccaggagctgctgtacagtcaggaggtgatacaggacctgacaaacatggtgcgagaactgctgatacagttttacaaatccacacgtttcaagcctacgagaatcatttactacagaggaggagtttcagaagggcagatgaagcaggtagcttggccagaacttatagcaatccgaaaggcctgtattagtttggaagaggactacagaccaggaataacctacattgttgtgcagaaaagacatcacaccaggctgttctgtgctgacaaaactgaaagggtgggtaagagtggcaacgtaccagcgggcactactgtagacagcaccatcacgcatccttctgaatttgacttttacctctgtagccacgcaggaattcagggaaccagccggccctcccactaccaggtcctgtgggatgacaactgtttcactgcagatgagctacagctgctgacctatcagctgtgtcacacgtatgtgaggtgtacgcgatcagtctctattccagcacctgcatactatgccagactggtagcatttagggctagataccatcttgtggacaaggatcacgacagtgctgaaggcagccacgtgtcaggacagagcaatggccgtgatcctcaggctctggcaaaggcagtgcagatccaccacgatactcagcatacaatgtattttgcttgagagcatctgggaagatgaggcaaagccaacgactcattcagtcctgacatgttttcaatgcctactgctatagctagggcccggtttctttcagactgcccactaccagcagctctgaacagtcgcactgaatccgtacttcaaacaatgtctgatgcaccgacacaattgagccattcgtttcgttgttttacgtaatagaaattcatagactgtcttttctgacgcattggactgaatttttacctcaaagcgcaaaaggccgaccatcctgatgtttttaaaggacttggcacgaaaggtttctatcgaatattttgctagctctggtctttaggttcccttctcctcccattagttgatggtgacggctgattctccgtcctcatgcgctgcttagtatgcgtagtatggcgaaactcctcctgttcaatgtaattgttctctcgtgtggggccatagatttttttaatggagattttagacttcactactgtaaatgccttttaacggacgttcactttcacaggtcttgcagtttttgtcggttttactaacgacctttttaacctgcagactcgggctgcaaagcaattgcactattctgcgagttcagatcggtggttcctgctctgtgaatgtgtaacatacccaggtaggtgtggggatgcctgtcagtaggttttaattgtaacagataatactgccgtggtatcataacatcattttcccccctctgaaaaacaaaaaggactttaaaaaaaaaaaaaaaaaaaggaaaaaaagaaaaaaatatatacaaaaaaaaaaggaaaaaaaattagcttttaggtattttgcagacttttacaaaagtgcccacttgatgctgctgtgtggtttgataaatcgaagtgattttaacacttttttctcataggaggtttaactttggcaataaatatttgttttctaagccccccccctaccagtgtaattttctagctgaggattgtgcatgagtgaccccaaatgttctcgtgtcgttttctgagcacacaatttggcagattctgaaacctaattagaaaagactcactttccgtgctcttttttttttgtttttaaagagttctttttaactgttttctattcactgttggtgtcccgtctgcagctttttgtataggtttggaactgggtgttacgtgtaggaaaggcttgccaacctgtacagtgtaatgtattgtgtgacaggcaacctaaggactcgtaccagcattttcaacttcttcccctgggaatccgggttgcacacacaactgcattcaacagcatgattaatcaatgtaagtctaattataccgattctgtcccagcctatagaaattagggttttaaaatctgcttggcttttctcagctgcagtgtgtaataaggaagaggggcttggttttacctttgggatccataaaggtagagcacgaagagtagattcctcttcggtgttagcgttaattagattaaaagtgtgttcctgacctgagtagagctcacaccactacttgcatagcacgtttgagaagcccaacaattgcactgtggtctctgatgctcgtgtggggtttgctgctaagtcgtctgctgttccaaagctgaggaaccagccccctcaaaacttcagcaataggaaatgctgtttccttcggtcttttaagcttgtaaataaatggaagtttacatttctaaatgctggttgtacttcagtcgtaccagagtacactgagcgtagtcttcaaatggttttgtaaccttctgtcaaataggttgtctcatgaaattaagtttaaactgttgttttttttttatcctgttcaaatgggactgaagcaaactctgctcctggcacatgtagtagatgagcttaggttggaaaaagatgcttttttgttttttctttattgtttttattttgaaagaatacctcacttgtgtaataaaatcaggacatgtgggtgggaaactgatggctgctttctcagtactcgttcagggagaataccaaaatcaacccctttatttggaatgaactctgaccgacccgacacacgtggagaactttggcaccttgaaaagaagctgagcacccttttttgagttctaggatcaaagatggctgtttgagtttgtgcactaggcaggaacggggctggtttcatagggggggggtgcataagaagtattgagttttatcaccaggtagtttgttgtccagtgccaagcactcctagttcagattgagtgaagtgagagcctctcttctgtgtgactgggctgagtatttgagctcagactgctcaatataaatcatatattgagacaatatgggttgttataggtgcccaaggtcgtggatggggccctgggcagccaacccatagcaggggggagggctgggggggttcccatccaacccagccattgtgtgatgctatgttaaccttgctttgggaagcacagcaaaaacctgaactcaatcaggtgttaaaacaccactgcaaacaagaaaagagaataggataatagtgcagggagcgttgacgttcaggactgttgcttggtgataactataagatcaaggttttggtaatactgtcctatgcaggtctgaaagctgagtctggaggttgggcttggtgatctgaattgtgatgcatgtgtcaatcaatgggaagatgtgcattctgtagatgtagtttttaaggtgttttcgtttcgtttttgttctttttttttatatatatatataaataaagcctgttggccactgttta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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