LOCUS       XM_015883233           10160 bp    mRNA    linear   VRT 18-FEB-2020
DEFINITION  PREDICTED: Coturnix japonica argonaute RISC catalytic component 3
            (AGO3), transcript variant X1, mRNA.
ACCESSION   XM_015883233
VERSION     XM_015883233.2
DBLINK      BioProject: PRJNA314147
KEYWORDS    RefSeq.
SOURCE      Coturnix japonica (Japanese quail)
  ORGANISM  Coturnix japonica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Perdicinae; Coturnix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029538.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 18, 2020 this sequence version replaced XM_015883233.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Coturnix japonica Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10160
                     /organism="Coturnix japonica"
                     /mol_type="mRNA"
                     /isolate="7356"
                     /db_xref="taxon:93934"
                     /chromosome="23"
                     /sex="male"
                     /tissue_type="blood"
                     /country="France: Tours, INRA PEAT"
     gene            1..10160
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:107323820"
     CDS             239..2848
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_015738719.1"
                     /db_xref="GeneID:107323820"
                     /translation="

MEISSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVTVVLLKLGVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"

     misc_feature    455..739
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    767..919
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    920..1282
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1076..1078,1121..1123,1163..1165,1175..1177,
                     1229..1231,1250..1252,1256..1258)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1415..2719
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1826..1828,1838..1840,1874..1885,1892..1894,
                     1916..1918,1925..1927,1937..1939,1949..1951)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2030..2032,2036..2038,2246..2248,2687..2689)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

gtgcggtgcgggggcggaacttccggctgccgtaggttcggcgggcggcagcgtgagtcggggctgcggggcggccacgcaacttccgccgcctcctcaggagacgggagcggcccagaggagctgcggcctaacgggaccgggagccgctctgctccctcacagctcagccccaccgggcccagctcagcccagcggaggagcccgcagccccgagtggctgcacccagctccatgaatggaaatcagcagcgcaggacccgtcggggcacagcccctgctcatggtgcccagacggcctggctatggcaccatgggcaaacccattaaactgctggccaactgcttccaagttgaaatcccaaagattgatgtctacctctatgaggtggatatcaaaccagataagtgtcctcggagggtgaacagggaggtggtggactcaatggtgcagcattttaaagtgacaatatttggggaccgtcgaccagtttatgatgggaaaagaagcctttatacagccaacccacttcccgtggccactactggggtggatttggatgtgacattaccaggagaaggtggaaaagatcgtcccttcaaagtgtcaataaagtttgtttctcgggtgagctggcacttgctgcatgaagttttgacaggaagaaccttgcctgagcctctggaactagacaaacctatcagcactaaccctgttcatgctgtcgatgtggtgctacgacacctgccctccatgaagtacacccctgtgggccgctccttcttctcagctccagaaggctacgatcaccccctgggggggggcagggaggtctggtttgggttccatcagtctgtccggcctgccatgtggaagatgatgctcaacatcgatgtttctgccactgccttctacaaagcacaacctgtgattcagtttatgtgtgaagttcttgacattcataatattgatgaacaaccgagacctctgactgattctcatcgggtaaaattcaccaaagagataaagggtctgaaggtagaagtgactcattgtggaacgatgagacggaaataccgtgtttgtaatgtaaccaggaggcctgcaagtcatcaaacctttcctttacagttagaaaatggccagactgtggagagaacagtagcacagtacttcagagagaaatacaacctccagctgaagtatcctcatctgccttgcctgcaagtggggcaggaacagaaacacacctacctgcctttagaagtatgtaacattgtggctggccaacggtgtatcaagaagctaacagacaatcagacatcaactatgataaaggccacagcgaggtctgctccagataggcaagaggaaataagcagattggtgagaagtgcaaattatgatgcggatccatttgttcaagagttccaattcaaagtccgggatgagatggcccatgtaacagggcgtgtgctgcccgcaccgatgctgcagtatggaggacggaacagaacagtggcaaccccaagccacggagtttgggacatgagagggaagcaattccacactggtgttgagatcaaaatgtgggctatagcttgttttgcaacgcagagacaatgcagagaagaaatactgaagggttttacagaccagctgcgtaagatctccaaggacgcagggatgccgatccaaggccagccctgcttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttcggcacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccaggaaaaacaccagtgtacgcggaggtgaagcgtgtgggagacacgctgttgggaatggccacgcagtgtgtgcaagtcaaaaacgtcattaaaacatctccacagaccctttcaaacctgtgcctgaagatcaacgttaaattaggaggaatcaataacatccttgtacctcatcaacgaccttctgtgttccagcagccagtgatctttctgggagctgatgtcactcaccctcctgctggagatggaaaaaaaccttccatagctgctgttgtaggtagtatggatgctcatcccagtcgatactgtgccaccgtgagagttcaacggccccgccaagagatcatccaagatttggctgccatggtgagggagcttctcatccagttctacaagtcaacacgcttcaagcccacgcgtatcatcttctatagggatggggtctctgaaggacagttccgacaggttttgtactatgaactgctagccattagagaagcctgcatcagtttggagaaggattaccagcctggaataacctatattgtggtgcagaaacgacatcatacacggttgttctgtgctgacagaacagaaagggtaactgttgtcctgctcaagcttggtgttggacgaagtggcaatatcccagctggaacaactgtagatacagacattacacatccgtatgagtttgatttttacctctgcagtcacgctggaatacagggtaccagccggccctcacactatcatgttctgtgggatgataactgttttactgcagatgaacttcagctgctgacttaccagctctgccacacatacgtgcgctgcacacgatcagtttctatacctgcaccagcgtattatgctcacctggtagcattcagagcacgataccatcttgtggacaaagaacatgacagtgctgaaggaagccacgtttcaggacagagcaatggcagagatccgcaggccctggcgaaggctgtacagattcaccaagacaccttacgcacgatgtacttcgcttaagtcaataaaaggggagcgaactcgctgacaggaagaactgacaaattaagccacatacaatgtatgtttccagtggggttggtttatggggtgtgcctccgatcgtgcagggccgagaggctgacccttaaattgacacaaggaagattgtttacttcaccgaggaacacagcactattatgcaatatgaaaccagccaactgcttttgtggcgcggtctcctgtaggaagcaccgccatcattttccttttctttttcatttctcatagtttaaccctcttatgcctttacctcaagttgctcggcagcacaactctctttgcaaaaaaaacaaccaacaaaattaataatgatactctaaacaaagaaagggtggtgtgattgtagataagcaacctggatcagaacagtcacagtcattcttggggagagagaaaagtgtgcagaaacccttttgttttttcacccaattgaggaatctttctctcagtgttgccatcagcattcgaacatatccgagtacatctgaatgtacagcactaagtagaaagaaatagaggggagggaagatgttttgcacactaatccaatcatttgaacgtagtttagccaacctgctgcctttcttcacagctttggagtcctcagctccaacaattcccttttaagaagcaaacaaagctagtggtgttactgcaggcagtggtgatcccaactcgctccctggcgactttactaaagctgctgttttaacctagtccaaaagtttcaattcttttctatctggcaagtcaaacatcttgaagcttcatgtgaggttgagcgtcccgagcttgatgggatggctacagtaaacaccagaactgaaactttagagctaaggtcgtctttgacaaaagcaaaacgctcgtttacttgctgcctctcacaccttaatgtgatttcacatgtacgtgttttttgaagtttagcttcctttgtttcttttatatttattagagtaataataatgctttaatttaattattacagaacggatggtcaacaccgactttttattttttagaagcgtaaccgtgtttgtttttaaaaaagaactgacaacttgtttttgctatcttttagtgcaataagcgaaaagaaaaccgtgtccattgagctgtaaccagagcagtgtttgtaccactggctgtggggtgggtgggtgggaaatggacaccttcgattctcaaaggacgaagtaattaagccttaattttgaaaggaaagttttttagtcagaaggaatttcctgttttccttttttaaatcaaaattagcaaaaaaaaattaatagcttttggatctctgcaaagcttcacctgcggcgctttggtttaacaaaggaaccagccttattttgggctttgagacgtggaagagatttgaagtaaacacaaaaaaaaaaggattttttttattattaagatctgagtttttatgtgcttaatgaaacctatttgacacggagaaaacatctgggagttattacgagtttttaggctattttccctctttgataacgactttccttttaaaattaagttgttggtaagacttcatttcactttgcaaataaaaaagagggctgggataaagttctaccttttgaaatcactgaaatgtgaatcaaaccaacgggactcttttcattccactttaaaggtaaagcgatattaagatgtcagagatgagcatcgattccaagggggggctgggaagttttgcactttgtaaactcgtgaactgcatttttttgactgtttcttttgggtttttttggtcttttatttgcactggttcatagtatattatactgcagatcgtttctatgggcattgctgttatcccagcccttcttgaacccccacctgctctccacatgaaaaccagagggtcggtaaagcagctttctctcccggtgttctcacaggatgctctttgccaatatactgtgttttgagcctaaaatctgagcccgtttttgcttcagcaggcatgacttctcccccatcttttctgccagaagacaaagtactgtattttgtgcatctgtatattgtactgaaatgtatgtagtgctgttcgcaacgctgtctcagagagctctgctcagcggttggcgtgtaggcatgctttatctcccagtaataaggaaggtaatgtaaagactaaccttgcaccgttgaactggaaatagtcctgagggtgggcagctcgtgtggcttagagggaggggtattgggggagttgcgaggttagggttagccccaagcccccctttctccttgtaatgtgcagtggggttagggttagccctgagccccccaccctgttgggctgcagctgcaggatggcagttctgttaatagaaggttcaggttaggctttgtacagaaagctaatgtttaaagagaagccgaattattattattattactattttttttcttgaaagaaaaggattttaccaaaccttcttgtgggtttctggcgttaagatgaaaattccttttttaaaaggtcttttaatgctcctttcagagacgctgcgcccttctcatcctgcccacgctcagtgactatgacccgagaggcttttcgctttcaactctcaccaaaaaacaaaagaagcttcaatgggaaaaggtgatcttagatgctagattgcttggacaactggtttacctggttttcatgtgaagagtacgtggaggtttgaatctctctccttggttttgcaaatatctacgtaaagtgccgatacttctttgtattacaatatcaacttactggcgttgtgagggccacacatttatgatgctgtagctgctatatttattgaaatggagatggacaattactgcactaaggaatgaggagataagcaaggaatcaaggttagttagagatcttgtttttttgttcttcgttttgttttcaaaagagaattaatggtgtgaaatatcaagtgtaacaaagggtgctgtcattttaactgagattaaatagccagatattcttcctttgtttaaaaacatatatattttgatgtttgcagtttgggggtggggggggaggggtcgggatataaatggtacctcatctgtggtggcagtttccggtatattttcagagtataatggatttcttttatttttgtacctgctctccttttaaaaaagacaaaaaaaaaaaagacaaaaaaaaaaaacaaaaccaaacaagctcaaatgttatgtgctgtgtggggaaatctcgagtggctcaccaggtccccccccccttcttctttcttgcatgggagctgcctgtggccgagggctgtgcttcaccctttgcagacatgcagctctcgtgctgcccatctgggtgcgtggctcccaccctgcagacgctgtatcagttcaccaagacctcgtttgtacttaagtgccacgtcctggtgggagctgcagtgctggtactgtgccaaagctgggttggtgctgagccctgcattgagctgagagggagcggagcattgcacagggcattgcacagggcattgctaggaggtgtgtgaacactgctggcaaagcaactgaccccatgcagggggcttcccctggtgggtataggggggtacacttcagctgtggccgtattactcaggattgttgtgttactgttaagtgtgtgatttggttacggtgtccaaaagttgttttctgtaggggttggttctggcatcgttctggaagcttggctgtagaaatggtttttctggagtaagaagagtttctgaaagctgtcaggcaaatgatttctagatgccattggtcctaaaccagtttcactttgtatacaggtttttgtcctttaaaatgctcagtgtgagacacaagatactcatcttctgtacaaattccagctacaaatactggctttctcctactctggaagtttgctctggtgaaactccgagctcagcctgcccttcaaacagcttgaggccttgttctttctcaatattccctttgtatcttgtcctcttctaatatcctcccagttttgtgagttgagggtttaggaccttcctcagagcacttttataacccaggaacccaacgctctgctgccataccttgcagttatccattccattgtcagagctgctgtccaaatggccacctctgtcccttcagtgctgtggagttttgcagctgctgcttatgggttgattggatctggtggaaataacccatagggggatgtgaaagggaaggatcccagtctccccttttcctacccgaagatggtacttcatattgatattgttaggacacccattttgctttggcacttgtttaagcaaggcatcaccgaggtaactggctcattgttgtgaccctggagctgtagtggtttagagcttgagctcgttgctgctttctgctagcaaaaggttctgtgtttttcaatagctgagttgcaaacatggggcagagcctcaggaagcctcatttaacactaaaacaaaggtgttggtccctcagcaggcagaggtgtgtgcagagggattgggctgcagggagagcattgaagcatcagcactgcagtaatgtgtcctgcctgccctggccttgcccatctgtgtccgaggtcccccctcacctaacacgggtagttcccatagggtccttcaacaacaaagtggttctgtttaaaattcgaagggaatatttcttattaagcaagacagtcctcagaaagtgcctttttttagaagacggtgctgtgtagattctattttccagttgtacgtggctgaacatttaggataaataactgaaaatgccaagtggttggtggtacctttaggtgctttcaggcatcagttctctgggtcaggaccaagcagaaccaggatggtggtttcctttggagggaaaagcattgggaagcgattgccaagagaagaggttaaacagaacagctcagcagacaggctgatgttaacgggtactgtggtttttaagtcattcaaccccatcatctgtgttctctgaatcccaaagcagcctttcctggttcaagacagacaggttcagtaggtcagacaacagagctgtggggttctgtgacccctttactaaacacagatgctccagtggatttctggctgcagtcattgggtggttggtacagaagatactgatagagctcccatgttaccttcagcgtcctgggctgcttgggtcagacttgaactcattgagagcaagcatgtgcctttttctgatccgagacagaagcttttagtgctggcagtttgcactggtcgatagtggggtcagagtgttgcttgaactgcttttaaggcttgaagcccttgatcagagtggagctggttttgtgttgagttacttaaaaggagccctgaattatttgtgaatgtcactaccccgagatgagaagcttttaaagcaaatggttactggagagtaatgtcagacaaacgtactgcctggtagacctgtggctttatgaaataaaacttaactctgatatgtttctccatagagagccattaattctgccttcatttgaatgttgcctgtcccggctgctgactgtaaggacacgaggaatgttgttggcagaggttgggaagtgggaatgtggtgctgaggactgaacatcactgatgatcactctctaaagagcagcttgcctgcagctgaggtggtgatatatgcacagtgctgtggtgtctgggataggagggatcagcaaagcagtaatggggagaaatgagcctctcctttcacacccaggtatgagcagtgaaggctgccgggtgccttaggtgctggttcaggctccaggctgcgtggggtggttatagagaataacagaagagcttttcaggttgttctctgcagtgttggggtaccatagggtcatccagccagcagctctggcatcggtgctggctctcagatgggttccctccctgaattgcttttgcttcagctttcagccctatctagtacacaggacgacgtgcgttgccttacgagagccagctgctgtgtgttctgaggatcagccgcgctctaagtgctgaattcctggtccaaaccttcttgccagttgctctttggagtctgtccatcccacacagcctgtgccctctgctttatctcagcacagccgtcccgaggagctccttgggctcagtccctgctgctttctgtggtctttcgttgcaaaatagaggatgagttgattcaaattaaaggttttctttacgtcgctgagaatctccgaggtctcccaaacccatttagcagttgagaaatgaaaacctaccgtaacaatctccaacagcaccaaaatgtgatcgtcgtgagattatcttacctgaatcgtgggtccacaaccaattctgatcccattgtgcgacaggcattaaaacaatttgctaatcacctttcatagtgctaacacttgcatatctcttcagtgcatccagaagggttatttgggcatctcacagtgctctgctctgttggccaagtgatacccagtggggcagtgctacagctgaggaacctttggtgtttggagccatttggagccattcctttggattttatatttgatttctgctcctctcagccatcaatctgtcgagtctcaccttgagaaaaccccacgttgtttccttgtagctaaacctgcttctatgcagttgcattttcttgttgtctgttccacagttgatcctgcacagcagcactgacaggatgggtgctcagtgatgtcccagctgtgctgccatgagcatcacggtgcagctctcctgtctgtgctgcttgtgagcactcaggcttccccaggtgcattaaatcgatggagaaatggcactgatgcttgttctgggtgaggattcatgtgttagagcgcatggaggcagctgatcatagataagagtgttgtcatgcaggggtatcacttaaagctttcactgtaattggtggcagttggtgatgagccactttgggcattgaaatgtctctttgggaggttggtggtggctgggttggctgtgtgtgccataagcattgctgtgttggtgcaggagcccgctgggagcagcgttgtgcaaataaaccctttttgcatattcaataccaccttgttcaaacgagaaacaaaactgttgtgctgtttgggattccttctctcagaataaagttctaataaaccaacccggtgcatcca

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