2024-04-19 18:49:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015649167 6644 bp mRNA linear VRT 17-APR-2020 DEFINITION PREDICTED: Parus major protein argonaute-1 (LOC107214130), transcript variant X4, mRNA. ACCESSION XM_015649167 VERSION XM_015649167.2 DBLINK BioProject: PRJNA312399 KEYWORDS RefSeq. SOURCE Parus major (Great Tit) ORGANISM Parus major Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031791.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 4, 2016 this sequence version replaced XM_015649167.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Parus major Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6644 /organism="Parus major" /mol_type="mRNA" /isolate="Abel" /db_xref="taxon:9157" /chromosome="23" /sex="male" /tissue_type="blood" /dev_stage="4 year old" gene 1..6644 /gene="LOC107214130" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns" /db_xref="GeneID:107214130" CDS 198..2546 /gene="LOC107214130" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_015504653.1" /db_xref="GeneID:107214130" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 240..464 /gene="LOC107214130" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 492..644 /gene="LOC107214130" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 645..1007 /gene="LOC107214130" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(801..803,846..848,888..890,900..902,954..956, 975..977,981..983) /gene="LOC107214130" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1140..2417 /gene="LOC107214130" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1551..1553,1563..1565,1599..1610,1617..1619, 1641..1643,1650..1652,1662..1664,1674..1676) /gene="LOC107214130" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1755..1757,1761..1763,1971..1973,2385..2387) /gene="LOC107214130" /note="active site" /db_xref="CDD:240015" ORIGIN
caggcgcatacctgccccccttgcagcaggtttttcaagcaccacgtcggcccgggataggaactgttgggaagcccatcaagctcctggccaactactttgaagtggacattcccaagatcgatgtgtatcattatgaagtggatatcaaacccgataaatgtccacgcagagtcaacagggaagtcgtggagtacatggtgcagcacttcaaaccacagatctttggtgaccgaaaaccagtctatgatgggaagaagaacatctatactgtcacggccttacccattgggaatgagcgggttgactttgaggtgacaatcccaggggaaggcaaggacaggatatttaaggtctctatcaaatggatggccattgtgagctggcgcatgctgcatgaggccctggtcagcgggcagatccctgttccactggagtccgtccaggcactggatgttgccatgaggcacctggcttccatgaggtacactcctgtcggccgctccttcttctccccccctgaaggctactaccaccccctgggagggggcagggaggtctggtttggcttccaccagtcagtccggcctgccatgtggaagatgatgctcaacattgatgtgtcggccactgccttctacaaagcccagcctgtcatcgagttcatgtgtgaggtgctggacatccggaacatcgatgagcagcccaagcccctgacggactcacagagagtgcgtttcaccaaggagatcaaaggtctgaaggtggaggtgacccactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccgacggccagccagccaccagacgttcccgctgcagctggagagtggtcagacagtggagtgcacagtggctcagtacttcaagcagaaatacaacctgcagctgaaataccctcacctgccctgtctccaggttggccaggaacagaaacacacgtaccttcccttggaggtatgtaacatcgtggcaggccagcggtgcatcaagaagctcacggataatcaaacgtcaaccatgataaaagcaacagccaggtctgccccagacagacaggaggaaatcagtcgcctgatgaagaatgccagctacaacctggatccatacattcaggagtttgggatcaaggtgaaggatgatatgactgaggtgacagggcgggtcctgcctgctcccatcctgcagtatggaggccggaaccgggccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggccattgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacagaccagctgcgcaagatctccaaggatgctgggatgccgatccagggccagccctgcttctgcaagtatgcccagggtgcagacagcgtggagcccatgttccgacacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccagggaagacgcctgtgtatgccgaagtgaagcgtgttggggacactctcctgggaatggccacgcagtgcgtccaggtcaagaatgtggtgaaaacctccccacagactctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccaacgctctgctgtctttcagcagccggtgatcttccttggggctgatgtcactcacccaccagcaggagatgggaagaaaccctccataactgctgttgtgggcagcatggacgcccacccgagccggtactgtgccacggtacgtgtgcagcgtcctcgccaagagatcattgaggatttgtcctacatggtgagggagctcctcatccagttctataaatccacacgcttcaaacccaccaggatcatcttctatcgcgatggtgttcctgaggggcagctcccacagatccttcactatgagctcctggcaatccgagatgcctgcatcaaactggagaaggattaccagcctggcatcacctacatcgttgtccagaagaggcatcacacccggctcttctgtgcagacaagaatgagaggattggaaagagtgggaacatcccagcaggaacaacagtggataccaacatcacccatccctttgagtttgacttctacctgtgcagtcatgcaggcattcagggcacgagccggccgtcccactactacgtgctctgggatgacaaccggttcacggcagacgagctgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctccgtctccatcccagccccagcctattacgcccggctggtggcgttccgggcacggtaccatctcgtggataaggagcacgacagtggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcaaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgtttttttttttcaatgagaaatcactgcagggcaggcagtgtcgactcgaggcaggagaccagcaccacgggacagaacgatccaacacctttgtaggattggaagagactgatgatgatgatgatgatgatgataatttttttaattttttctggctttgcaaaattttgacctgaccaaacacatgaaggcgttcaagggaagggataaaactcccaggaggcggaagcaggttttcatttttaagatgcaatactagagactcctgactgtgaactggcggctttggtcctccgttgcccaccaggcgctggtaggtatttttgtgggtgttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagattatgagatgctttaatgggttgaggggaaaagaaaaaaaacaaacaactagtttataggagaagtgtaacactaacagttccccgcccccgagtaattccccctggataatgtaaggcaccctagcacttagctcagaactgaaaactgtcttcctcgtgttacaagctagtcacctgctgccgctcgaagcaacagtcacagacttttccatgggtgagtgccttactatgatgctgcaaaatttcaatgtttttaatcttgtaaggaaactagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttctatggtcctcagttgcagtttgtgtcagatcatgacctcacagtggttaaaccccattgaaagatgtgcactttcatacaggacacgtttaatggctgctgacccatttttgtttccaatgtattacttgttatttaaaactgtttctgacaaatgggggcatctcaatcccatgaggacagaaagcgctatccatgttttttctttaggttttttcccccctgaatttttatgatggacaccgggattttttactaaacattatttttatacgatattgagtctgttgccaaaatccacaagtcattaacattctcaaagtttacatccccgcacttcctgaggctgtatgctcacaccacagctctccgtttctgtccaatgagtgctgccgactgcagcctgtgctgtgccaggtgctccacagtgctcgttgcccgtgtgcattcggcatgtgtctgcccaggcctgctttcccacctaccatatctccaccttcagcaccccaggctctcaccctctctgctgctaggttttgctgatctttgtgtcatggtatcactgctctcatgcccagggtttttattctgaaagcacaccagattgttccttagaatgatgaaatccctgttgttgttatgggggaaactcctgatttgtccttgtaccaggaaaacagccttttcccccacaggaacctggtcactgcttttcagacccattttgctgcacagtgaccgtacgcacggtggcgggaccgtggtggcagctcagtaccagtatcatccgggcacattatctggggttttttctatgaaagtgttcacagcacttccttcaagagacaaatgaggcgcacgctcctgccacgctctgaggggaagagctctggtatcattttcctgctgaacgcatttcccaggcggccccacacaagcgctacccctggcccatgcgcagacagaagcacatgaaaacctctttgatttgtactttctgacgttgaaacttgccttgccttcatgaaaaccacaccggtcatgttggcccactgagctgtcctaaccctgggaattcactctttccattttcttttggggcaacgtgtctgtgaacagtgacaacatcactatgctatgcaaactaagtgctgagtccactgatgtcacgtttggtgaagattctgcgtttagcacagtcctgttttcctcaagaccacagtgtttggttcatatcctcctttgcaccttgtgtcaacctccactgctgtatacccccaaggtgacggggaggagaccaggaaccatccgtggtcagtaggtagggaactcttaaggaaggcttagagcatagggaacacatcaacacttaagtgtcaacatgagaagcctacattcctctacacaagtgcctgcatagtgacaccaatcagcacctccatctcatcctccgaactctggcttgtgttcactgaaagcaaaacaatctcagaggggctgttcccgctcacctggtgttagaaggctcctccttatgaataaaatcggggtcaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaccggaacgcacctggctgctgctctgcagtgaggggcaaaggtatttaggttccttgtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaacaatttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcatgttctgaccttatttcaccctctgtgttgggttttcatggttttggataaacaaaaaagccaatctcagtagctgctgtgccctttaaaccctgtttccactttgaagaagtttagagaggttggagtgacctgcatgttttctatactagactatgcaccgtaccctctccgcgctccagcactggcatttctccccctctcttgtctgagatgaaaacaagtagctgcatgttgaggtgcgttttgctgcctgtagcggataggtgttaccccaggtacaaatcaggatctgtagttagccacaaaccccacacgggcatcccgatcagctccgagtgtctgccttctccatgcgcacgagttccacctgcgattggaagtgtcgctgagtgcatgcagttctgtgggaagaggagtagctttcatttacctgttgaatgctgtcgtttcccttatctcgtatctgaaaagaatggggcgggagggttgctctgccctctctccgaagcttccagggcagtcagggtgttcttggatcgcacatgatgtctcaaacagcccaagcatccagcattgcctcatggaaggttttcttcttggaaaatcagtgtgaaataaaagaatgtgattgtttcaggaagggaagccagacagcaggagagcaataaacaagtgaaattcgtttcttgcccaagtgatttgcacttcaatagttgtgaaagaaaatttccaggactccagtgcttttgtgttcgatttccagcccctttcgtacctcctttctatgagcaagtgtgggactgtacatagggtgtttacaggatgctccgtttgggttgttatttttcttgtgggttttttttgctctagcttgaactctgtatggtccatttgttaaatagccgtgaacagttgatgtacagtacttactaaacaagcagcagcacaaaatttattttattaagaaaatatggcttatattttaaaggttgaatatcatttttttttatttttttttggtatgtgtggaattaaggctggtgaagagtaacaaagtccttggattaggccaaaagaaaatactgtaagatcctaaccacctctttattaaagaaagcagtatgattaaagagctccagaacattgtatttatattggatttgatttaattgcatttgtggattattttttttgccttggtcctgatttttgcttgcaacttcaactttgcagtcccaagtgtctgttaccctgtaactgttggcagaagacctaaataaaagcaatgtgaatatgtttttattgacataaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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