2024-04-29 06:30:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015357071 1121 bp mRNA linear VRT 08-JAN-2016 DEFINITION PREDICTED: Lepisosteus oculatus testis- and ovary-specific PAZ domain-containing protein 1-like (LOC107078576), transcript variant X1, mRNA. ACCESSION XM_015357071 VERSION XM_015357071.1 DBLINK BioProject: PRJNA221149 KEYWORDS RefSeq. SOURCE Lepisosteus oculatus (spotted gar) ORGANISM Lepisosteus oculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006269976.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Lepisosteus oculatus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1121 /organism="Lepisosteus oculatus" /mol_type="mRNA" /isolate="Spotted Gar 1" /db_xref="taxon:7918" /sex="female" /country="USA: Bayou Chevreuil, St. James Parish, Louisiana" /lat_lon="29.91 N 90.80 W" /linkage_group="LG11" gene 1..1121 /gene="LOC107078576" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:107078576" CDS 510..1025 /gene="LOC107078576" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1-like isoform X1" /protein_id="XP_015212557.1" /db_xref="GeneID:107078576" /translation="
MVCKKIPVNFVLLRNLIDRLGRQSLWVKARSLYKCALHLGCYPPVKENTYCRLLSVPCSLTEIEMTLAFEMFMVSNANSIQNPSTCTHALQIVLKSRFLPRKEEDGSISECDYHAAVSRLVSAAQITRPKLVIKYATVNVCGEQVFTLDPLSALKWLSQNMEWAGKAWLVS"
ORIGIN
aaggtgctcgaaatggacttttcatagcttaaaatgtcatctctccctcgatagatgtctatccttgtgaatgcgtacaaggtcgtgtgttgaagagatgtggctggtgacagactgtcggtatcagatgtgcacagtgccttattgatgaagttctgaccatgaagggagaatctcaggggtcccgtgtcttttacagttggacatcctcctgcatctcatgtagtgccacagaagtggagagtctttcataaacatttaatcatagttgccagttttaggcggcacagtttccagcctctttcggtgccattggcttatccttgaaagccaaggtgtacattgaaggagggcagggccatgacttactgtcctctgttcatgaaagtctttttttttcagtttcagatgcaccatctgtttcccagtgtgttccagttttcaacagactcttaaagtgttgcattgagcagcacaatttgacagtgtcgtccaacgctgtggacttcatggtgtgcaagaagatacctgtgaactttgtcctgctcaggaacttaattgacagattgggaagacagtctttgtgggtgaaggcaagatccctatacaaatgtgcgctgcatctgggctgctacccccctgtcaaagaaaacacgtactgcaggcttctctccgttccctgctccctgaccgagatcgagatgacactggcctttgaaatgttcatggtttcaaatgcaaacagcattcagaatccaagtacttgtacacacgctctacagattgtactgaaaagtcgttttctccccaggaaagaggaagatgggtcgatcagtgaatgtgactaccatgcagctgtgagcagactcgtgtcggctgcccagatcaccaggccgaagctggtgattaaatatgccaccgtcaacgtctgcggagagcaggtgttcacgctggaccctctgtcggctctgaagtggctgagccagaacatggagtgggctgggaaggcctggctggtttcctgacgtcttcaaggagcccgtcaaagaagagctgcaacgttgtacattaatcattaatgtatggtgcacaataaagatgaagataggtttttcagatca
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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