2024-04-27 08:19:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014810675 2180 bp mRNA linear INV 01-DEC-2015 DEFINITION PREDICTED: Priapulus caudatus uncharacterized LOC106808101 (LOC106808101), transcript variant X3, mRNA. ACCESSION XM_014810675 VERSION XM_014810675.1 DBLINK BioProject: PRJNA303167 KEYWORDS RefSeq. SOURCE Priapulus caudatus ORGANISM Priapulus caudatus Eukaryota; Metazoa; Ecdysozoa; Scalidophora; Priapulida; Priapulimorpha; Priapulimorphida; Priapulidae; Priapulus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014577314.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Priapulus caudatus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2180 /organism="Priapulus caudatus" /mol_type="mRNA" /isolation_source="mud" /db_xref="taxon:37621" /chromosome="Unknown" /sex="male" /country="Sweden: Gulmarsfjord" /lat_lon="58.270 N 11.453 E" gene 1..2180 /gene="LOC106808101" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:106808101" CDS 238..1668 /gene="LOC106808101" /codon_start=1 /product="uncharacterized protein LOC106808101 isoform X3" /protein_id="XP_014666161.1" /db_xref="GeneID:106808101" /translation="
MDAAKRESLIKNRDEIVERTQPHLAAILARLLEEGVVGQHIYDIISAKPTPAERAAKLVHILLEKDNRTYDVFASALHNNDLADLARKMAATAFEIETDLPANLHAVELHIEEKTLRILEGKLEGRPHSRGGGDSVIEAALHRGKVPPAAHYLSSPPAEIKDLLQKIVVGIGKLRNRRTPGFTLVYGDVETKSESDLTAAAMHVPELWQTTADGQADFPSDVIWQKIDIVRDDAELFLKTKTILSRLDEKYKHHRQPTCLADAHIALQQVLTNNPHCLLILEDVRSFKVIEHFNVHPRTLVTTHDKQLVDRVKQDLTSALVDLVYVGTSSTTYVPNFRDSVFRRSAGPMDAGGSANNGSFVAHDDSTEEPTFAVQPIETDALRTTPKLRPDANYRLHIAHEIVYVTPAATPNAILYQWRYECIREYSSRPAMFYFKSIDGREERQFRFKTEPGKGKELHEKMRIAARRRMEELSQR"
misc_feature 262..504 /gene="LOC106808101" /note="Caspase activation and recruitment domain: a protein-protein interaction domain; Region: CARD; cd01671" /db_xref="CDD:260018" misc_feature <1414..1641 /gene="LOC106808101" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:450165" ORIGIN
cacgtgttagctgcattactcagatgcccttatattttgatatctcgtcataatttgtttacctgatccggaaatagtcggctatatagagcgtttgaaagcgtgtgtaaccaagggatagcagcgagcgaggaagcgagcagagagcgagcgagagagagagagagagagagaaagagagaaagagagagcgagagagctccagagcgaaagagacataaaccgccgctcagaaacatggatgccgcaaaacgtgaatcactcatcaaaaaccgcgacgagatagtcgagaggacgcagccccacctggcggcgattctcgcgcggctgctggaggaaggcgtcgtagggcaacacatctatgacatcatcagcgccaagccgacgccggccgagcgagcagctaagctcgtgcacatactactcgagaaggacaaccgaacatacgacgtgttcgcgagcgcactgcacaacaacgacctcgcagatctcgctcgcaagatggccgccacggcgttcgaaatcgagacggacctcccggcgaacctccatgccgtcgagttgcacatcgaggagaagacgctgcggatactcgaggggaagctggagggcaggccgcactcgcggggaggaggggactcggtgatcgaagcggcgctgcatcgcggcaaggtgccgccagcggcgcactatctcagcagcccgccggccgagatcaaagacctcctgcagaagatagttgtcggcatcgggaagctgcgtaacagacgcacgccgggattcacgctcgtttacggcgacgtcgagacgaagtccgagtcggacctgacggcggcggcgatgcacgtgcccgagctgtggcagacaaccgccgacgggcaggcggactttccgagtgacgtcatctggcagaagatcgacatagttcgcgacgacgccgagctgtttctgaagacgaagacgattctgtcgagactggatgagaagtacaagcatcacaggcagccgacgtgtctcgcggacgctcacatcgccctccagcaggttctcaccaacaacccgcattgtctgctcattctcgaggacgtcaggtcgttcaaggtcatcgagcatttcaacgtacatccgcgcaccctggtgacgacccacgataaacagctggtcgacagagtcaagcaggatctaacgtcggcgctcgtcgacctggtgtacgtcggcacgagtagcacgacgtacgtgccaaacttccgcgactccgtcttccggcgatcggcgggacctatggacgcgggaggcagcgccaacaacggcagcttcgtagcacacgatgattctactgaggagccgacgtttgcagtacagccgatagagacagacgcactgcggaccacgcccaagctccgacccgacgctaactaccgtctgcacatcgcccacgagattgtctacgtcacacccgcagcgacacccaacgccatcttgtaccaatggcgctacgaatgcatacgagaatacagttccagaccagcgatgttttatttcaaatcgatagatggcagagaagaacgacaattcaggtttaagacggagccggggaaaggaaaggaactgcacgagaagatgcgaattgccgctagacggcgcatggaggaactctcgcaacgataacagtgaaatacggactatgcgcgtgcggcgtatctatgacaaatacgacatacgcatatacgctctcctattgtcataggaagattcttcctatgacaaatattgttgtatgtgtcgtgcgcatcataggagtttaggagcgctattatgaatgcaagcagtgaatttcagctgtaaagcggaacgaagttgactcgccaatatttgtcataggaagaatcttcctatgacaaatagtgtcataggagagcgtatatgcgtatgtcgtatttgtcatagatgcaagcagaacatgttggcgtagcatacctcgacacaggcacctagtcgactacagaaatacatgtcaacgacataacaggaagttttacatattatagagatatatcatatatagcgaataacaccttaaaatattatcatgtatcatatagcaaatgtgttacgtgtacatcagtaatgggttatagatcttcaataaatgttattttatatagaaaatatgaacgtta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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