2024-05-19 16:10:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014704996 735 bp mRNA linear PLN 18-NOV-2015 DEFINITION Bipolaris victoriae FI3 hypothetical protein partial mRNA. ACCESSION XM_014704996 VERSION XM_014704996.1 DBLINK BioProject: PRJNA302306 BioSample: SAMN02981453 KEYWORDS RefSeq. SOURCE Bipolaris victoriae FI3 ORGANISM Bipolaris victoriae FI3 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Bipolaris. REFERENCE 1 (bases 1 to 735) AUTHORS Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Ohm,R.A., Otillar,R., Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C., Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J., Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A., Lindquist,E., Barry,K., Schmutz,J., Baker,S.E., Ciuffetti,L.M., Grigoriev,I.V., Zhong,S. and Turgeon,B.G. TITLE Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens JOURNAL PLoS Genet. 9 (1), E1003233 (2013) PUBMED 23357949 REFERENCE 2 (bases 1 to 735) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (18-NOV-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 735) AUTHORS Ohm,R.A., Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Otillar,R., Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C., Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J., Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A., Lindquist,E., Barry,K., Schmutz,J., Baker,S., Ciuffetti,L.M., Grigoriev,I.V., Zhong,S., Nordberg,B.G., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (28-JAN-2014) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_014575381). ##Metadata-START## Organism Display Name :: Cochliobolus victoriae FI3 GOLD Stamp ID :: Gr00267 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..735 /organism="Bipolaris victoriae FI3" /mol_type="mRNA" /strain="FI3" /db_xref="taxon:930091" /chromosome="Unknown" gene <1..>735 /locus_tag="COCVIDRAFT_34417" /db_xref="GeneID:26255451" CDS 1..735 /locus_tag="COCVIDRAFT_34417" /codon_start=1 /product="hypothetical protein" /protein_id="XP_014560482.1" /db_xref="GeneID:26255451" /db_xref="InterPro:IPR001424" /db_xref="InterPro:IPR006121" /db_xref="JGIDB:Cocvi1_34417" /translation="
MTVTAFETIFAVPMTCQSCINDIEGSLHQLSGINKVTANLKEQLVSVEGTAAPSAIVEAIQATGRDAVLRGSGKSDSAAVCILESHAPQVENKVRGLVRMVEVSPGMTIVDLSIRGLSPGTYHATVRESGNISEGPESTGGIWELGQSQKETKACRGIFGTVQVGKGGVGSVFLDKPMHIWEVIGRSIVVAKEQDGKFDKNDADTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
misc_feature 22..699 /locus_tag="COCVIDRAFT_34417" /note="copper, zinc superoxide dismutase; Region: PLN02957" /db_xref="CDD:215516" ORIGIN
atgacggtaacagcctttgaaacgatattcgcagtgcccatgacctgtcagtcgtgcatcaacgacatcgagggttccctacatcagttgagtggtatcaacaaagtgactgccaacctcaaggagcaattagtatctgtcgagggcacagcagcaccgtcggccattgtagaggcgattcaagctactgggcgtgatgctgttctccgggggtcgggcaaatcagacagtgcagcggtatgcattctagaatcacacgcaccacaggtggagaacaaggttcgcggcctggtgcgcatggtggaagtttctcctggtatgaccattgtggacttgagtataagagggctgtcacctggaacctatcatgccacagtacgtgagtcgggaaacatttccgagggacctgaatcgactggtgggatttgggaacttggtcagtcacaaaaagagaccaaggcttgtcgaggcatctttggaaccgttcaggttggaaagggtggagtgggatcggtgtttctcgacaagcccatgcacatctgggaagtgattgggcgcagcatcgtggttgcgaaagagcaggacggcaagtttgacaagaacgacgcagacacgctagttggggtcattgcacgcagtgcgggcgtatgggataacgacaagacggtgtgttcgtgttctggcaagacggtgtggcaggagcgcgaggagcagcgcgatcgcggtatgctctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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