2025-04-02 18:18:32, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_014689283 1041 bp mRNA linear PLN 26-JUN-2024 DEFINITION Metarhizium brunneum Very-long-chain 3-oxoacyl-CoA reductase (MKAR), partial mRNA. ACCESSION XM_014689283 VERSION XM_014689283.1 DBLINK BioProject: PRJNA1128270 BioSample: SAMN15394350 KEYWORDS RefSeq. SOURCE Metarhizium brunneum ORGANISM Metarhizium brunneum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Clavicipitaceae; Metarhizium. REFERENCE 1 (bases 1 to 1041) AUTHORS Saud,z., Kortsinoglou,A., Kouvelis,V.N. and Butt,T.M. TITLE Telomere length de novo assembly of all 7 chromosomes of the fungus, Metarhizium brunneum, using a novel assembly pipeline JOURNAL Unpublished REFERENCE 2 (bases 1 to 1041) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1041) AUTHORS Saud,z., Kortsinoglou,A., Kouvelis,V.N. and Butt,T.M. TITLE Direct Submission JOURNAL Submitted (09-JUL-2020) Biocontrol and Natural Products Group (BANP), Biological Sciences, Swansea University, Singleton Park Campus, Swansea SA28PP, United Kingdom COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_089423). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1041 /organism="Metarhizium brunneum" /mol_type="mRNA" /strain="4556" /host="Boophilus sp. [Acari: Ixodidae]" /db_xref="taxon:500148" /chromosome="2" /geo_loc_name="USA: Florida" /collection_date="29-Sep-1993" gene <1..>1041 /gene="MKAR" /locus_tag="G6M90_00g046430" /old_locus_tag="MBR_04840" /db_xref="GeneID:26242110" CDS 1..1041 /gene="MKAR" /locus_tag="G6M90_00g046430" /old_locus_tag="MBR_04840" /codon_start=1 /product="Very-long-chain 3-oxoacyl-CoA reductase" /protein_id="XP_014544769.1" /db_xref="GeneID:26242110" /db_xref="GO:0005783,GO" /db_xref="GO:0016491,GO" /db_xref="GO:0030497,GO" /db_xref="GO:0045703" /db_xref="InterPro:IPR002347" /db_xref="PFAM:PF00106" /translation="
MDKILENPYVAGIKSHVEQLGPIPQPVLGAFAGVGALWLTYKLFGYLQLVLSAFVFSGHNLRKYGRAGSWAVVTGASDGLGKEYASQLAAKGFNLVLVSRTKSKLESLAKELQEKYHGKDLDIKIHAMDFAKDDDADYEKLAEVVRGLDVAILINNVGQSHSMPVSFLETPKDELQNIVTINCLGTLKVTQIVAPILKQRKHGLILTMGSFGGWTPTPYLATYSGSKAFLQQWSNALSSELADDHVDVYLVLSHLVTTAMSKVRRPSLLIPNARNFVKAALGKIGLGGYQTAPNTYTPWWSHSFMLWLIENVPGVNSPVTIWYNKKMHLDIRRRALRKQAREAKKQ"
misc_feature 202..939 /gene="MKAR" /locus_tag="G6M90_00g046430" /old_locus_tag="MBR_04840" /note="17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs; Region: 17beta-HSD1_like_SDR_c; cd05356" /db_xref="CDD:187614" misc_feature order(223..225,229..240,295..303,379..387,466..474, 541..543,622..630,667..669,679..681,757..768,772..777) /gene="MKAR" /locus_tag="G6M90_00g046430" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187614" misc_feature order(544..546,628..630,667..669,679..681) /gene="MKAR" /locus_tag="G6M90_00g046430" /note="active site" /db_xref="CDD:187614" ORIGIN
atggataagattttggagaatccctacgtggcaggcatcaagtcgcacgtcgagcagcttggcccgattccccagcctgtgctaggtgcctttgctggcgttggtgcactttggctcacatacaagctctttggctatctccagctcgtcctgagtgcattcgtcttctccggtcacaatcttcgcaagtatggccgcgccggatcatgggccgtcgtaactggtgcctcagatggtcttggtaaggagtatgcctcccaactcgctgccaagggcttcaatctcgtcctcgtttcccgaaccaaatccaagctcgagtcgctcgccaaggagctgcaagagaaataccatggcaaggaccttgatatcaagattcacgccatggacttcgccaaggacgacgatgccgattatgagaagctcgccgaggtcgttcgtggcctcgacgttgctatcctgataaacaatgtcgggcagagccacagcatgcccgtctctttcctggagacacccaaggacgagctgcagaacattgttacaatcaattgcctgggtactctcaaggtcactcagattgttgcccctattctcaagcagcgcaagcatgggttgatattgaccatgggctccttcggtggctggacacctactccttacctggctacctactctggcagcaaggccttcctgcagcaatggagcaatgctctttcgtctgaacttgctgatgaccacgtggacgtgtatctggttctcagccacctagttactactgccatgagcaaggtccgccgccctagcctcctgattcccaatgcccgtaattttgtcaaggctgctctcggcaaaattggccttggtggttatcagactgcccccaacacttacactccttggtggagccactctttcatgctgtggttgattgagaacgttcccggcgtcaacagccctgtcactatctggtacaacaagaaaatgcacttggatattcggagacgggccctccgcaagcaggcgcgcgaggctaagaagcagtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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