2024-04-29 15:16:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014429273 1107 bp mRNA linear INV 26-MAR-2018 DEFINITION PREDICTED: Halyomorpha halys mitochondrial fission 1 protein (LOC106686126), mRNA. ACCESSION XM_014429273 VERSION XM_014429273.2 DBLINK BioProject: PRJNA298780 KEYWORDS RefSeq. SOURCE Halyomorpha halys (brown marmorated stink bug) ORGANISM Halyomorpha halys Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020110419.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_014429273.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Halyomorpha halys Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1107 /organism="Halyomorpha halys" /mol_type="mRNA" /isolate="HHAL.00" /db_xref="taxon:286706" /chromosome="Unknown" /sex="female" /tissue_type="whole organism" /note="undomesticated insect" gene 1..1107 /gene="LOC106686126" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:106686126" CDS 274..723 /gene="LOC106686126" /codon_start=1 /product="mitochondrial fission 1 protein" /protein_id="XP_014284759.1" /db_xref="GeneID:106686126" /translation="
MDEILDEVGSPEELKKFEAIYNQQLEEQSVTTDATFNYAWSLVRSRYAADIRKGICLLETIFNEDREQTRRDCVYYLAIGYAKLKEYNKALQYTKAFLNLEPANLQVQSLDSTIRKRMEKEGLIGMALAGGAVLALGGLVTLGLALSKK"
misc_feature 301..642 /gene="LOC106686126" /note="Mitochondrial Fission Protein Fis1, cytosolic domain; Region: Fis1; cd12212" /db_xref="CDD:276936" misc_feature order(310..312,319..324,331..333,367..375,379..384, 391..393,418..420,427..432,436..441,448..450,457..462, 466..468,475..477,481..489,493..495,499..501,523..525, 529..531,538..540,547..552,559..561) /gene="LOC106686126" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:276936" misc_feature 367..465 /gene="LOC106686126" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276936" misc_feature 475..573 /gene="LOC106686126" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276936" ORIGIN
ctattttttatttagtagtcatttaactgtatatcatcacttagttttaatttaatgaaatagattaatatcattaagccataaagaataacataaccgtctgatagttgactttgagccaaagcccataaattcaacctagcagcacgaacagctgtttttgttgggactcggggaggcagcgctatctcaagtgattagttcaaccttctgtcatagttgattagtgttcgtcagtcctttaattgtcatgctgtaagaatacaattcggaatggacgaaatcttagatgaagtgggttccccagaagaacttaagaaatttgaagcgatatacaaccaacaattagaagaacaatcggttactaccgatgcaacttttaattatgcttggagcttagttcgtagtcgttatgcagctgacataagaaaaggcatatgtctattagaaactattttcaatgaagatagagagcaaacaagaagagattgtgtttattacttagccataggctatgccaaattaaaggagtataataaagcactgcaatataccaaagcttttttaaatttagaaccagcaaacctccaggtgcaaagtttagatagtaccattaggaaaagaatggagaaagagggtctgattggtatggcactggctggaggagctgttttagcgcttggaggtcttgttacattgggattagctttatcgaaaaaataacttttaattcttaccatgttgtttttgttttgtttaaaaacagcatggtaatttaaataaataaatacaccttcgcattttttattttattatttttattttacatggttgtgttagatgtgatatttaaggaagtcattttagttcataaattattttaataatttagaatatataaattattgttctttaattataactatttaaaaaaataatataaaaaattttcaacctttttttttgttatgctttatttatgtttagcacaaaatattatatctcattccaatttcttggggcatctgttgatacattagaaaagtaagtcaggatgtattatattaaaaaaaataaagttgaaaaataataatacacacatttgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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