2024-04-25 22:39:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014428494 1688 bp mRNA linear INV 26-MAR-2018 DEFINITION PREDICTED: Halyomorpha halys protein AATF-like (LOC106685683), mRNA. ACCESSION XM_014428494 VERSION XM_014428494.2 DBLINK BioProject: PRJNA298780 KEYWORDS RefSeq. SOURCE Halyomorpha halys (brown marmorated stink bug) ORGANISM Halyomorpha halys Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020110656.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_014428494.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Halyomorpha halys Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1688 /organism="Halyomorpha halys" /mol_type="mRNA" /isolate="HHAL.00" /db_xref="taxon:286706" /chromosome="Unknown" /sex="female" /tissue_type="whole organism" /note="undomesticated insect" gene 1..1688 /gene="LOC106685683" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:106685683" CDS 82..1650 /gene="LOC106685683" /codon_start=1 /product="protein AATF-like" /protein_id="XP_014283980.1" /db_xref="GeneID:106685683" /translation="
MVLIKEIELALKPKDTDVIEPEEEDLEVIAKSHFIQDEGNEEISPGAIRKHVEADMRVAYPGQPTSRKRVFKSFLKEKVSPHLSTTNESDYDEASDKEDSDLSDQDDNIHGSEDEVDSNDDEVDVEDEVDSNDDKVDVEDEVDSNDDEVDVEDEVDSNDNDDDEDSVDGDDSSDYGGSITGFEDSKVSDEEEEEEESEDDSKGINIFSAQARDIKSDIEKGRSIRNQLTIWEKLIECRIKLQPGLINTNKLYQCEALKEFKKHLNAEEEEIVSETYSVLSNLMKGLLELQDVTLNAAPEYREIKNLKRKNDLSTDEKPEEKKKRSEDFLQVIHEDFKPFKDTVIQKWNEKTKLSYGRMSKSDFSAFDQPTLKQIEEILLDRPRLLKRTQIKRSDYQILGKSKAVPDEVSNETSKTRDIQECDPEIFDDDDFYHKLLRDFIENKTSDASEFSKRGKQWLELQKLRSRMKAKVDTRASKGRKIRFTVHNKMVNFMAPVPSFSWSDEAKNELFKSLFGQALKQKG"
misc_feature 736..1131 /gene="LOC106685683" /note="Apoptosis antagonizing transcription factor; Region: AATF-Che1; pfam13339" /db_xref="CDD:433129" misc_feature 1375..1623 /gene="LOC106685683" /note="Apoptosis-antagonizing transcription factor, C-terminal; Region: TRAUB; pfam08164" /db_xref="CDD:429853" ORIGIN
ctcattgggatatctctctaacctagatgtaaataaacccacgaggtttcaagaatatttgtagcatgacatagtagtgccatggttttaattaaagaaattgagttggctttaaagcctaaagatactgatgttattgaaccagaggaagaagatttggaagtgatagctaaatcgcatttcattcaggatgaaggtaatgaagaaatatcccctggtgccatacgaaaacatgtggaagctgatatgcgggtggcttatcctggacaacccacttccagaaaacgtgtttttaaaagttttttaaaagaaaaagtaagcccacatctctccacgacaaatgaatcggattatgatgaagcaagtgataaggaagactcagatttaagtgatcaagatgataacattcatggaagtgaggatgaggttgacagcaatgatgatgaggttgacgttgaagatgaggttgatagcaatgatgataaggttgacgttgaagatgaggttgatagcaatgatgatgaggttgacgttgaagatgaggttgatagcaatgataatgatgatgatgaagacagtgtggatggagatgactctagtgattacggaggatctattacgggctttgaggattcaaaagtttctgatgaagaagaggaagaggaagaatcagaagatgactcaaaaggtattaacatcttctcagcacaagcaagagacattaaaagtgacattgaaaaaggaaggtcgattcgtaatcagttgactatttgggaaaaactaatcgaatgtcgaatcaaattgcaacctggattaatcaatacaaataagttataccaatgtgaagctttaaaagagtttaaaaaacatttaaatgcagaagaggaagaaattgtatctgaaacttattcagttttaagcaatttaatgaaaggactacttgaacttcaggatgtaacattgaatgcagctcctgaatatagagaaataaaaaatttgaaaagaaaaaatgatctttccactgatgaaaaaccagaagaaaagaaaaaaagaagtgaggatttcctacaagtaattcatgaagacttcaaaccatttaaggatactgtaattcagaaatggaatgaaaaaaccaagttatcttatggaagaatgagtaaatcagatttttcagcatttgatcaaccaacattaaaacaaatagaagaaattttattagaccgcccaagacttttgaaaaggacacaaatcaaaagatcagactatcaaatccttggtaaaagtaaagcagtgcctgatgaagtttcaaatgagacttctaaaacaagagacattcaagaatgtgatccagaaatatttgatgatgatgatttttatcataagctgttacgtgattttattgaaaataaaacatctgatgcatctgaattctcgaaaaggggaaagcaatggttggagttacagaagcttagaagtcggatgaaggcgaaagtagacacaagggcatcaaaaggaaggaaaataaggttcaccgttcacaataaaatggtcaacttcatggcacctgtaccgtcgttttcttggagtgatgaagccaagaatgaacttttcaaatctctttttggacaagctcttaaacaaaaaggttaaaatgttgcaattgaaatatatctatatttaattaaagg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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