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2024-04-19 15:02:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_014297730            1407 bp    mRNA    linear   PLN 22-SEP-2015
DEFINITION  Sphaeroforma arctica JP610 hypothetical protein mRNA.
ACCESSION   XM_014297730
VERSION     XM_014297730.1
DBLINK      BioProject: PRJNA295933
            BioSample: SAMN02953786
KEYWORDS    RefSeq.
SOURCE      Sphaeroforma arctica JP610
  ORGANISM  Sphaeroforma arctica JP610
            Eukaryota; Ichthyosporea; Ichthyophonida; Sphaeroforma.
REFERENCE   1  (bases 1 to 1407)
  AUTHORS   Russ,C., Cuomo,C., Young,S.K., Zeng,Q., Gargeya,S., Alvarado,L.,
            Berlin,A., Chapman,S.B., Chen,Z., Freedman,E., Gellesch,M.,
            Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D.,
            Howarth,C., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Saif,S.,
            Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J.,
            Yandava,C., Burger,G., Gray,M.W., Holland,P.W.H., King,N.,
            Lang,F.B.F., Roger,A.J., Ruiz-Trillo,I., Haas,B., Nusbaum,C. and
            Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     The Genome Sequence of Sphaeroforma arctica JP610
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1407)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1407)
  AUTHORS   Russ,C., Cuomo,C., Young,S.K., Zeng,Q., Gargeya,S., Alvarado,L.,
            Berlin,A., Chapman,S.B., Chen,Z., Freedman,E., Gellesch,M.,
            Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D.,
            Howarth,C., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Saif,S.,
            Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J.,
            Yandava,C., Burger,G., Gray,M.W., Holland,P.W.H., King,N.,
            Lang,F.B.F., Roger,A.J., Ruiz-Trillo,I., Haas,B., Nusbaum,C. and
            Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2011) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_014039826).
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Sphaeroforma arctica JP610"
                     /mol_type="mRNA"
                     /strain="JP610"
                     /db_xref="taxon:667725"
                     /chromosome="Unknown"
     gene            1..1407
                     /locus_tag="SARC_08298"
                     /db_xref="GeneID:25908802"
     CDS             236..814
                     /locus_tag="SARC_08298"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_014153205.1"
                     /db_xref="GeneID:25908802"
                     /translation="
MEEGYRDPCPYRIIDDFGGAFAMGAIGGALWHAGKGFKNAPPGIRFRSSLSAIKARAPVMGGNFAAWGGMFSTFDCTLVYLRQKEDPWNAIASGALTGGVLAARGGLSVASRSAFFGGVMLALIEGLSIAINHGIASSSRPQLDHVPDAPIPPPMTMAAPPPQRSQAANDYGQNMGGFSGAPAQHDEELLTT"
     misc_feature    251..670
                     /locus_tag="SARC_08298"
                     /note="Tim17/Tim22/Tim23/Pmp24 family; Region: Tim17;
                     cl02381"
                     /db_xref="CDD:445766"
ORIGIN      
aattcgtcgaatatatgactgaaccccttttcctgcttggataggcatgcatttatttgaaagacatatatttacacgacttccacatagtcagggcacatatacgcatagcgaccctataccccacacatatatacatacatatatatatatatatatgtaatatatatataaatacatatccttaattatacacatacatagtatttgtacataaacaacacacaaatatacaatggaggaaggataccgtgacccctgtccctaccgaatcatcgatgatttcggtggagctttcgccatgggcgctattggtggagctctgtggcatgcgggtaaggggttcaagaacgcacctcccggcatacgcttcagaagcagtctgtcggccatcaaagccagagctccagtgatgggtggcaattttgctgcgtggggaggcatgttctcaaccttcgactgcacactcgtatatctcagacagaaggaagacccctggaacgccattgccagtggagctctgacaggtggcgtgttagccgcccggggtggactctccgtggccagtcgatcggcgttcttcggtggtgtgatgctggcgctcattgagggtctgagtatagctattaaccacggcattgcatcgtcctcccgtccccaactggaccacgtgcccgatgcacccatccccccgcccatgactatggccgcgccccctccccagcggagtcaggccgcgaacgactacggtcagaatatgggtggcttcagcggagcccccgcccagcacgacgaagagctgttaacgacgtagatgatataaataacttgtaaataattgtatatctaattgtgtatataccccggtgggagtgtcaatgtgacacgacacagcatattcgatactccctgtgttaaacgaaacgactagtatatggtggtgtcaaggcacaacgcgctccacccgtgatacgttcatatacaaggcacatgtattatacttgcgtgcaggtacatgtatgtgagtgtacacgcaagtacatgcatgtgagtgtacgtgccaggcgattcaaagcttgttagaagatgtcgcgaatggaggagggctcgattcccggcggcttgagcgggtatctcggttgagctacccggtaggcttcgtgtacatagagactgcgtgctaagattagttcacaaatttaggcggtaatcatctcgcgagcgtggttacgtgtggggattggtactgcaacaagcatgcacttcatctgtgtatacggacacatacattgcgtgtgtgtgcgtgtgcgtgtgcatatgcacatgtagatatgtatatcggttgtagagcagttgtgcaagtatatctaataaaactgaaatgctgcagaagcggctcatctttgg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]