2024-05-19 17:11:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014223623 782 bp mRNA linear PLN 02-JAN-2024 DEFINITION Bipolaris maydis ATCC 48331 uncharacterized protein (COCC4DRAFT_196375), partial mRNA. ACCESSION XM_014223623 VERSION XM_014223623.1 DBLINK BioProject: PRJNA295860 BioSample: SAMN00113370 KEYWORDS RefSeq. SOURCE Bipolaris maydis ATCC 48331 ORGANISM Bipolaris maydis ATCC 48331 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Bipolaris. REFERENCE 1 (bases 1 to 782) AUTHORS Ohm,R.A., Feau,N., Henrissat,B., Schoch,C.L., Horwitz,B.A., Barry,K.W., Condon,B.J., Copeland,A.C., Dhillon,B., Glaser,F., Hesse,C.N., Kosti,I., LaButti,K., Lindquist,E.A., Lucas,S., Salamov,A.A., Bradshaw,R.E., Ciuffetti,L., Hamelin,R.C., Kema,G.H., Lawrence,C., Scott,J.A., Spatafora,J.W., Turgeon,B.G., de Wit,P.J., Zhong,S., Goodwin,S.B. and Grigoriev,I.V. TITLE Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi JOURNAL PLoS Pathog. 8 (12), E1003037 (2012) PUBMED 23236275 REFERENCE 2 (bases 1 to 782) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 782) AUTHORS Ohm,R.A., Otillar,R., Martin,J., Schackwitz,W., Grimwood,J., Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A., Lindquist,E., Lucas,S., Barry,K., Schmutz,J., Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., MohdZainudin,N., Xue,C., Wang,R., Dhillon,B., Tu,Z.J., Steffenson,B.J., Baker,S., Zhong,S., Turgeon,B.G. and Grigoriev,I.V. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-OCT-2012) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_014024927). ##Metadata-START## Organism Display Name :: Cochliobolus heterostrophus ATCC 48331 GOLD Stamp ID :: Gi08794 ##Metadata-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..782 /organism="Bipolaris maydis ATCC 48331" /mol_type="mRNA" /strain="ATCC 48331" /culture_collection="ATCC:48331" /db_xref="taxon:665024" /chromosome="Unknown" gene 1..>782 /locus_tag="COCC4DRAFT_196375" /db_xref="GeneID:25841795" CDS 48..782 /locus_tag="COCC4DRAFT_196375" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_014079098.1" /db_xref="GeneID:25841795" /db_xref="InterPro:IPR001424" /db_xref="InterPro:IPR006121" /db_xref="JGIDB:CocheC4_1_196375" /translation="
MTVTPFETIFAVPMTCQSCINDIEGSLHQLSGINKVTANLKEQLVSIEGTAAPSAIVEAIQATGRDAVLRGSGKSDSAAVCILESHAPQVENKVRGLVRMVEVSPGMTIVDLSIRGLSPGTYHATVRESGNISEGPESTGGIWELGQSQKETKACRGIFGTVQVGKGGVGSVFLDKPIHIWEVIGRSIVVAREQDGKFDKKDADTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
misc_feature 69..746 /locus_tag="COCC4DRAFT_196375" /note="copper, zinc superoxide dismutase; Region: PLN02957" /db_xref="CDD:215516" ORIGIN
acagtcgagccatctggcattaatataccgatttcactcttttcgccatgacggtaacgccctttgaaacgatattcgcagtgcccatgacctgtcagtcgtgcatcaatgacatcgagggttccctacatcagttgagtggtatcaacaaagtgactgccaacctcaaggagcagttagtatctatcgagggcacagcagcaccgtcggccattgtagaggcgattcaggctactggccgtgatgctgttctgcgggggtcgggcaagtcagacagtgcagcggtctgcattctagaatcacacgcgccgcaggtggagaacaaggttcgcggcctggtgcgcatggtagaggtttcccctggtatgacgattgtggacttgagtataagagggttgtcacctggaacctatcatgctacagtacgtgagtcgggaaacatttccgagggacctgaatcgactggtgggatttgggaactcgggcagtcacaaaaagagaccaaggcttgtcgaggcatcttcggaaccgttcaggtcggaaagggtggagtaggatcggtgtttctcgacaagcctatccacatctgggaagtgattggacgcagcattgtggttgcgagagagcaggacggcaagtttgacaagaaggatgcggacacgctagttggggtcattgcacgcagtgcgggcgtatgggataacgacaagacggtatgctcgtgttcgggcaagacggtgtggcaggagcgcgaggagcagcgcgatcgcggcatgctgtga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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