2024-04-29 12:33:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014093812 810 bp mRNA linear PLN 29-DEC-2023 DEFINITION Trichoderma atroviride IMI 206040 uncharacterized protein (TRIATDRAFT_269423), partial mRNA. ACCESSION XM_014093812 VERSION XM_014093812.1 DBLINK BioProject: PRJNA264112 BioSample: SAMN02744066 KEYWORDS RefSeq. SOURCE Trichoderma atroviride IMI 206040 ORGANISM Trichoderma atroviride IMI 206040 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma. REFERENCE 1 (bases 1 to 810) AUTHORS Kubicek,C.P., Herrera-Estrella,A., Seidl-Seiboth,V., Martinez,D.A., Druzhinina,I.S., Thon,M., Zeilinger,S., Casas-Flores,S., Horwitz,B.A., Mukherjee,P.K., Mukherjee,M., Kredics,L., Alcaraz,L.D., Aerts,A., Antal,Z., Atanasova,L., Cervantes-Badillo,M.G., Challacombe,J., Chertkov,O., McCluskey,K., Coulpier,F., Deshpande,N., von Dohren,H., Ebbole,D.J., Esquivel-Naranjo,E.U., Fekete,E., Flipphi,M., Glaser,F., Gomez-Rodriguez,E.Y., Gruber,S., Han,C., Henrissat,B., Hermosa,R., Hernandez-Onate,M., Karaffa,L., Kosti,I., Le Crom,S., Lindquist,E., Lucas,S., Lubeck,M., Lubeck,P.S., Margeot,A., Metz,B., Misra,M., Nevalainen,H., Omann,M., Packer,N., Perrone,G., Uresti-Rivera,E.E., Salamov,A., Schmoll,M., Seiboth,B., Shapiro,H., Sukno,S., Tamayo-Ramos,J.A., Tisch,D., Wiest,A., Wilkinson,H.H., Zhang,M., Coutinho,P.M., Kenerley,C.M., Monte,E., Baker,S.E. and Grigoriev,I.V. TITLE Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma JOURNAL Genome Biol. 12 (4), R40 (2011) PUBMED 21501500 REFERENCE 2 (bases 1 to 810) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 810) AUTHORS Aerts,A., Kubicek,C.P., Herrera-Estrella,A., Seidl,V., Le Crom,S., Martinez,D.A., Druzhinina,I.S., Zeilinger,S., Casas-Flores,S., Horwitz,B.A., Mukherjee,P.K., Mukherjee,M., Kredics,L., Alcaraz,L.D., Antal,Z., Atanasova,L., Cervantes-Badillo,M.G., Challacombe,J., Chertkov,O., McCluskey,K., Coulpier,F., Deshpande,N., von Doehren,H., Ebbole,D.J., Esquivel-Naranjo,E.U., Fekete,E., Flipphi,M., Glaser,F., Gomez-Rodriguez,E.Y., Gruber,S., Han,C., Henrissat,B., Hermosa,R., Hernandez-Onate,M., Karaffa,L., Kosti,I., Lindquist,E., Lucas,S., Lubeck,M., Lubeck,P.S., Margeot,A., Metz,B., Misra,M., Nevalainen,H., Omann,M., Packer,N., Perrone,G., Uresti-Rivera,E.E., Salamov,A., Schmoll,M., Seiboth,B., Shapiro,H., Sukno,S., Tamayo-Ramos,J.A., Thon,M., Tisch,D., Wiest,A., Wilkinson,H.H., Zhang,M., Coutinho,P.M., Kenerley,C.M., Monte,E., Baker,S.E. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA REFERENCE 4 (bases 1 to 810) AUTHORS Bristow,J., Rubin,E., Lucas,S., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Barry,K., Shapiro,H., Pitluck,S., Baker,S.E., Bruno,K.S. and Kubicek,C.P. TITLE Direct Submission JOURNAL Submitted (05-JUL-2007) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_014013646). ##Metadata-START## Organism Display Name :: Trichoderma atroviride IMI 206040 GOLD Stamp ID :: Gi01368 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..810 /organism="Trichoderma atroviride IMI 206040" /mol_type="mRNA" /strain="IMI 206040" /db_xref="taxon:452589" /chromosome="Unknown" gene <1..>810 /locus_tag="TRIATDRAFT_269423" /db_xref="GeneID:25779239" CDS 1..810 /locus_tag="TRIATDRAFT_269423" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_013949287.1" /db_xref="GeneID:25779239" /db_xref="JGIDB:Triat2_269423" /translation="
MDFPSQMPDCPFTMYSRWSRDERRTYLRWLQNWFQHMLDTGSAILAPELDFHATKMQPAPEISAESWKKEEMGEPNPIADLVLETLQHAPAMRYKGWKRVQDTLTLIPPARRTTELVGLLCAALRGEMIYWQRLQKIEQSISLESLRSMYIMNVILIVSVLTGLEVRQEEIVPPVPLAYPVIEEDYLALDDILVQLQKLKTVDADDQANQIEVQRFRQVLGRLMARVRPGQLFAAMAGHLAQLVRDSAPDDNFDFADPHQVLTDCALYL"
ORIGIN
atggactttccctctcagatgcccgattgtccttttactatgtattcgcggtggagtcgagacgagagacgcacctacttacgctggctgcaaaactggtttcagcacatgcttgacactggaagcgctatcctggcccccgaattggattttcatgctaccaaaatgcagccggcaccagagatatcggccgagtcatggaaaaaagaggagatgggcgagccaaaccctatcgcagacttggtcttggagactctgcaacacgcaccagcaatgcgttacaagggctggaaaagagtacaagataccctcaccctcatcccgcccgcaaggagaacaacggagcttgtgggtcttttatgcgctgcgcttcggggagagatgatttattggcaacggcttcaaaagattgagcagtccatatcgttggagtctctgagatcaatgtacataatgaatgtcatactcatcgtctcggtcctgacaggactagaagtcaggcaagaagagattgtgccacccgtcccattggcgtatcctgtgatagaggaggactacttggctttggatgacatactcgtccagctgcaaaagctgaaaacagttgatgccgatgatcaggcaaaccaaattgaagtgcaaagattcaggcaagttttgggtcgcctgatggcgcgggtacgcccggggcaattgtttgctgctatggctgggcacctcgcccagcttgtgagagattcagctcccgacgacaacttcgatttcgctgatcctcatcaagtcctaacggactgcgccttgtacctttga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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