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2025-04-02 18:10:53, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_014080473             597 bp    mRNA    linear   PLN 29-DEC-2023
DEFINITION  Ogataea parapolymorpha DL-1 Peptidyl-prolyl cis-trans isomerase D
            (HPODL_00517), partial mRNA.
ACCESSION   XM_014080473
VERSION     XM_014080473.1
DBLINK      BioProject: PRJNA264114
            BioSample: SAMN02981294
KEYWORDS    RefSeq.
SOURCE      Ogataea parapolymorpha DL-1
  ORGANISM  Ogataea parapolymorpha DL-1
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Pichiomycetes; Pichiales; Pichiaceae; Ogataea.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Ravin,N.V., Mardanov,A.V., Eldarov,M.A., Kadnikov,V.V.,
            Beletsky,A.V., Zvereva,M.I., Smekalova,E.M., Dontsova,O.A. and
            Skryabin,K.G.
  TITLE     Genome sequence of the methylotrophic yeast Hansenula polymorpha
            DL1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 597)
  AUTHORS   Mardanov,A.V., Kadnikov,V.V. and Beletsky,A.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2013) Lab of Molecular Cloning, Centre
            'Bioengineering' RAS, Prosp. 60-let Oktyabrya, bld. 7-1, Moscow
            117312, Russia
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_027864).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Ogataea parapolymorpha DL-1"
                     /mol_type="mRNA"
                     /strain="DL-1"
                     /type_material="holotype of Candida parapolymorpha"
                     /db_xref="taxon:871575"
                     /chromosome="III"
                     /geo_loc_name="Russia: Moscow"
     gene            <1..>597
                     /locus_tag="HPODL_00517"
                     /db_xref="GeneID:25769988"
     CDS             1..597
                     /locus_tag="HPODL_00517"
                     /EC_number="5.2.1.8"
                     /codon_start=1
                     /product="Peptidyl-prolyl cis-trans isomerase D"
                     /protein_id="XP_013935948.1"
                     /db_xref="GeneID:25769988"
                     /db_xref="GO:0003755"
                     /db_xref="GO:0005783"
                     /db_xref="GO:0005788"
                     /db_xref="GO:0006457"
                     /translation="
MKFPLAFLFFFLCTVMAQQSPKITHTVYFDITEGEGEDAHHLGRIVLGLFGEVVPKTVENFYQLAISDDPKLGYKGSKFHRVIPNFMIQGGDFTRGDGTGGKSIYGAKFEDENFELKHEGPGYLSMANAGKDTNGSQFFITTVKTPWLDGKHVVFGKVLDGMDTVKLIESTKTGFQNRPVRPIVISDAGEIKVTKDEL"
     misc_feature    79..567
                     /locus_tag="HPODL_00517"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
     misc_feature    order(241..243,247..249,256..261,265..267,379..384,
                     409..411,415..417,439..444,454..456)
                     /locus_tag="HPODL_00517"
                     /note="active site"
                     /db_xref="CDD:238194"
ORIGIN      
atgaagtttccgctagcatttctgttcttctttttgtgcacagtcatggcccagcagtctccaaagatcacacacaccgtttactttgacatcacagagggcgagggagaagacgcccaccacctcggccgcattgtccttggtctatttggcgaggtggtgccaaagacagtcgagaatttctaccaattggccatttccgacgaccctaagttgggctacaagggatccaagttccacagagtcattcctaactttatgattcaaggaggtgacttcactcgaggcgacggaaccggaggcaaatcgatctacggggctaagttcgaggacgagaactttgagctcaagcacgagggcccaggctatctgtcaatggcaaatgcagggaaagacaccaacggctcgcaattcttcatcaccaccgtgaaaacgccatggcttgacggaaagcacgtggtcttcggtaaggtgctcgacggaatggacacggtcaagctcattgagtccaccaagacaggtttccagaatcgtcctgtccggccgattgtcatctcggacgcaggcgaaatcaaagtcaccaaagacgagctgtag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]